PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G433100.1 | ||||||||
Common Name | B456_009G433100, LOC105768355 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 345aa MW: 38484.1 Da PI: 7.3434 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.7 | 2.2e-53 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+ Gorai.009G433100.1 15 LPPGFRFHPTDEELVVHYLKKKASSAPLPV-AIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKP 104 79****************************.88***************988899************************************* PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 vl++ ++++vg+kk Lvfy g+ pkg kt+W+mheyrl Gorai.009G433100.1 105 VLTSgGTQKVGVKKALVFYGGKPPKGIKTSWIMHEYRL 142 **9977788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.75E-65 | 7 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.781 | 15 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.3E-28 | 16 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MESTDSSIGS QQPNLPPGFR FHPTDEELVV HYLKKKASSA PLPVAIIAEV DLYKFDPWEL 60 PAKATFGEQE WYFFSPRDRK YPNGVRPNRA ATSGYWKATG TDKPVLTSGG TQKVGVKKAL 120 VFYGGKPPKG IKTSWIMHEY RLADNKNNNK PPGYDFSNKK NSLRLDDWVL CRIYKKNNTH 180 RPLDQDKDDS IDDMLGSIQP SISIGNQHNN PKFQFASKGT ATSFGTLLEN HEHSLFDGMM 240 GNNSDEGINN GSMSQSMVNP LKRNLPSLFW TDETSIEPQA NKKFHGDSND GSMEKMDGNG 300 SVTTLLSQLP ESPSLQQQQE TMMGSMGDGI YRPPFQLPGL HWYS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-74 | 14 | 178 | 14 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed throughout anthers from stages 8 to 12. Later confined to distal region of anthers from stage 13. {ECO:0000269|PubMed:16055634}. | |||||
Uniprot | TISSUE SPECIFICITY: Stamen specific, in anthers from stage 8 (PubMed:15100403, PubMed:16055634). Expressed in the outer integument, but seems not expressed in the embryo at the torpedo stage (PubMed:18849494). {ECO:0000269|PubMed:15100403, ECO:0000269|PubMed:16055634, ECO:0000269|PubMed:18849494}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847201 | 0.0 | KC847201.1 Gossypium hirsutum NAC domain protein NAC24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001313855.1 | 0.0 | NAC transcription factor 56-like | ||||
Refseq | XP_012443700.1 | 0.0 | PREDICTED: NAC transcription factor 25 | ||||
Swissprot | Q9LD44 | 1e-125 | NAC56_ARATH; NAC transcription factor 56 | ||||
TrEMBL | A0A0D2V1M8 | 0.0 | A0A0D2V1M8_GOSRA; Uncharacterized protein | ||||
TrEMBL | W6J8Q0 | 0.0 | W6J8Q0_GOSHI; NAC domain protein NAC24 | ||||
STRING | Gorai.009G433100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM190 | 28 | 276 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 1e-121 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G433100.1 |
Entrez Gene | 105768355 |
Publications ? help Back to Top | |||
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