PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G418700.1
Common NameB456_009G418700, LOC105767856
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 349aa    MW: 39839.7 Da    PI: 6.6245
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G418700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.84.3e-53221491128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhP+deel+v+yLk+kv++++l++ ++i+e+d+yk++Pw+Lp k++ +e+ew+fFs+rd+ky++g r+nra++sgyWkatg+d++
  Gorai.009G418700.1  22 LPPGFRFHPSDEELIVHYLKNKVTSNPLPA-SIIAEIDLYKYNPWELPIKASFGEDEWFFFSPRDRKYPNGARPNRAAASGYWKATGTDRP 111
                         79****************************.89***************88888999*********************************** PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +l++ +++ +g+kk Lvfykgr pkg+kt+W+mheyrl
  Gorai.009G418700.1 112 ILTScGTKSIGVKKALVFYKGRPPKGTKTEWIMHEYRL 149
                         **9978889***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-6219176IPR003441NAC domain
PROSITE profilePS5100560.28722176IPR003441NAC domain
PfamPF023651.6E-2723149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MLGGSSMEEI PAAGNNSSEI QLPPGFRFHP SDEELIVHYL KNKVTSNPLP ASIIAEIDLY  60
KYNPWELPIK ASFGEDEWFF FSPRDRKYPN GARPNRAAAS GYWKATGTDR PILTSCGTKS  120
IGVKKALVFY KGRPPKGTKT EWIMHEYRLL ETMIWTPKRK GSMRLDDWVL CRVRQKASIQ  180
RNSWEDRNIS SHEPADSFYV PNSIEPWPSN TKHNVEMGKT YLFNDCPMLP FIFASQDLPC  240
FDTTSSISFQ SSDKSCTSLQ EANSGNNNMQ ISFSSLQNLF NPLKRESMEE GSFVPTSCKK  300
LKNTEKDCSE VNFYRSNHLE NSDSSPHQWN PMMQYDQQLN FPDFTETD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A9e-691817816170NAC domain-containing protein 19
3swm_B9e-691817816170NAC domain-containing protein 19
3swm_C9e-691817816170NAC domain-containing protein 19
3swm_D9e-691817816170NAC domain-containing protein 19
3swp_A9e-691817816170NAC domain-containing protein 19
3swp_B9e-691817816170NAC domain-containing protein 19
3swp_C9e-691817816170NAC domain-containing protein 19
3swp_D9e-691817816170NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during pollen development and maturation. {ECO:0000269|PubMed:21107887}.
UniprotTISSUE SPECIFICITY: Expressed specifically in the tapetum. {ECO:0000269|PubMed:21107887}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472160.0KC847216.1 Gossypium hirsutum NAC domain protein NAC39 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442883.10.0PREDICTED: NAC transcription factor 25-like
SwissprotQ8GY422e-82NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A0D2U3F40.0A0A0D2U3F4_GOSRA; Uncharacterized protein
STRINGGorai.009G418700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17560810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.17e-85NAC domain containing protein 25
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]