PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G409600.1 | ||||||||
Common Name | B456_009G409600, LOC105767813 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 227aa MW: 26472.3 Da PI: 9.4468 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.6 | 1.1e-18 | 63 | 116 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t+eqle Le F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k Gorai.009G409600.1 63 KKKRLTNEQLEWLEMSFQEDIKLDPQRKMKLSRELGLQPRQIAVWFQNRRARWK 116 56679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 109 | 3.4e-35 | 62 | 154 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekk+rl++eq++ LE+sF+e+ kL+p+rK++l+reLglqprq+avWFqnrRAR+k+k+lE+ ++aL++++ +++e+++L++ev++L++ l Gorai.009G409600.1 62 EKKKRLTNEQLEWLEMSFQEDIKLDPQRKMKLSRELGLQPRQIAVWFQNRRARWKAKELERLCHALQHHLHLVSKETQKLQHEVSKLKAML 152 69**************************************************************************************988 PP HD-ZIP_I/II 92 ke 93 +e Gorai.009G409600.1 153 RE 154 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.281 | 58 | 118 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.31E-17 | 60 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.1E-15 | 60 | 122 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.69E-16 | 63 | 119 | No hit | No description |
Pfam | PF00046 | 4.4E-16 | 63 | 116 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-19 | 64 | 122 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.9E-5 | 89 | 98 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 93 | 116 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.9E-5 | 98 | 114 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MEWNGTLSFV PGQPPSLTSL YNYNYDQYSP GMEMMNVGLA EAEAMEKKKK KKKKKIYMNN 60 EEKKKRLTNE QLEWLEMSFQ EDIKLDPQRK MKLSRELGLQ PRQIAVWFQN RRARWKAKEL 120 ERLCHALQHH LHLVSKETQK LQHEVSKLKA MLREQATRNQ VSTGYTEISG EETIESTLIH 180 CSNKPMVVPN NHHPIADHCS YLFNVDKHNP NPVGSTYWGE QLPTNP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 46 | 54 | KKKKKKKKK |
2 | 48 | 54 | KKKKKKK |
3 | 48 | 65 | KKKKKKKIYMNNEEKKKR |
4 | 51 | 65 | KKKKIYMNNEEKKKR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX614786 | 1e-157 | JX614786.1 Gossypium hirsutum clone NBRI_GE58425 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012442838.1 | 1e-170 | PREDICTED: homeobox-leucine zipper protein ATHB-22-like | ||||
Swissprot | Q9LZR0 | 3e-44 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A0D2SGJ8 | 1e-169 | A0A0D2SGJ8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G409600.1 | 1e-169 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM28463 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 5e-37 | homeobox 51 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G409600.1 |
Entrez Gene | 105767813 |
Publications ? help Back to Top | |||
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