PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G407200.1
Common NameB456_009G407200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 203aa    MW: 21690.2 Da    PI: 5.7405
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G407200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.37.8e-183381355
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        y+GVr++  +g+Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  Gorai.009G407200.1 33 YRGVRRRT-SGKWVSEIREPR----KpNRIWLGTFPTPEMAAIAYDVAALALKG 81
                        9****888.8*********94....478***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.7873289IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-303291IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-203291IPR016177DNA-binding domain
SMARTSM003803.0E-343295IPR001471AP2/ERF domain
PfamPF008476.8E-113381IPR001471AP2/ERF domain
PRINTSPR003677.1E-113344IPR001471AP2/ERF domain
CDDcd000181.89E-293391No hitNo description
PRINTSPR003677.1E-117191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MHYSKPRKSS NASSGGGGAS ASAGGASERH RLYRGVRRRT SGKWVSEIRE PRKPNRIWLG  60
TFPTPEMAAI AYDVAALALK GQDAELNFPN SAASLPVPAS KSPRDIQAAA TSAAAALGAA  120
NDALFGNEDI EGQGNNISRV VPEKPTTAYE FVDEDMIFDM PNVLANMAEG MLLSPPRWDI  180
DIAADHVPAY NTGDYENLWK FP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-162590773Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442203.11e-147PREDICTED: ethylene-responsive transcription factor ERF024-like
SwissprotQ9SJR08e-54ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A0D2V0I21e-145A0A0D2V0I2_GOSRA; Uncharacterized protein
STRINGGorai.009G407200.11e-146(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64242546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.16e-45ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]