PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G406500.1
Common NameB456_009G406500, LOC105766713
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 370aa    MW: 40711.6 Da    PI: 8.5973
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G406500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC794.4e-25146189144
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                         d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e
  Gorai.009G406500.1 146 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHVHRGRNRSRKPVE 189
                         79***************************************987 PP
2QLQ483.8e-1773108136
                 QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                         s F+ +Q+q+L+ Q+l+++y++a++ vPp+Llq i 
  Gorai.009G406500.1  73 SFFSLSQWQELELQALIFRYMLAGAAVPPQLLQSIE 108
                         67*******************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.9E-1073109IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.8174109IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.5E-1275107IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.987146190IPR014977WRC domain
PfamPF088796.5E-22147189IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MDLHLKQCRN QHESDHQQPP PSANIPKLHF HHHHHQHPSP LPLLVPHHHC KSSSNNLPPV  60
PHSSSTFPSR MGSFFSLSQW QELELQALIF RYMLAGAAVP PQLLQSIENS TILHSPSYFL  120
HHPLRHFSHY QPPLLQSGYW GRAAMDPEPG RCRRTDGKKW RCSRDVVAGQ KYCERHVHRG  180
RNRSRKPVEM LKSSGACTTI INNNTLVGAA DGVVDVGCGG LKPTSLIPNS PLELAGDRAN  240
SLLLSGHSPP VDLLRLNYSS SDSNNVHKGL FEAQNEVNNR SDGQMLRHFF DDRPRSLQQP  300
DNHAESPMSS ATCLSISMPG NSSSDVSLKL STGNGDQLNW AAGWASNQVA SMGGPLAEAL  360
RSSMSNSQP*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269|PubMed:20023165}.
UniprotTISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269|PubMed:12974814}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5825934e-58JX582593.1 Gossypium hirsutum clone NBRI_GE15450 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012441744.10.0PREDICTED: growth-regulating factor 3-like isoform X1
SwissprotQ8L8A73e-79GRF4_ARATH; Growth-regulating factor 4
TrEMBLA0A0D2QW660.0A0A0D2QW66_GOSRA; Uncharacterized protein
STRINGGorai.009G406500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19262667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.16e-79growth-regulating factor 4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  3. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]