PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G399000.3 | ||||||||
Common Name | B456_009G399000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 242aa MW: 27142 Da PI: 6.5855 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 103.8 | 9.4e-33 | 84 | 186 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k ltpsdv+k++rlv+pk++ae++ g ++ ++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+++F+++++ Gorai.009G399000.3 84 FEKPLTPSDVGKLNRLVIPKQHAEKYfplgGDSSDKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKQLDAGDIILFQRHRT 174 99***************************966777899*************************************************9888 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ +l+++++r+ Gorai.009G399000.3 175 DGDRLFIGWRRR 186 9999******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.2E-42 | 78 | 188 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.83E-30 | 81 | 185 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.44E-28 | 82 | 176 | No hit | No description |
Pfam | PF02362 | 1.1E-29 | 84 | 186 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.142 | 84 | 187 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.2E-26 | 84 | 187 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MEPTQTPPSS KLHNPSSISL ENSPWTSHFY PSMFLSSIHA PRHFNLNHDD DEELDDQTST 60 LNTLNPKPNP PENHQLGHET EPMFEKPLTP SDVGKLNRLV IPKQHAEKYF PLGGDSSDKG 120 LLLSFEDESG KCWRFRYSYW NSSQSYVLTK GWSRYVKEKQ LDAGDIILFQ RHRTDGDRLF 180 IGWRRRGAAV VVAPAATDGG NAMMENDSGG GGGGNGGWNN RGLYQRYPHL GHIQGWCGYL 240 E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 7e-51 | 79 | 186 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 7e-51 | 79 | 186 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012441607.1 | 1e-176 | PREDICTED: B3 domain-containing protein At2g36080-like | ||||
Swissprot | Q9FNI3 | 9e-59 | Y5625_ARATH; B3 domain-containing protein At5g06250 | ||||
TrEMBL | A0A0D2TZE7 | 1e-180 | A0A0D2TZE7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G399000.1 | 1e-175 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36080.2 | 5e-55 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G399000.3 |
Publications ? help Back to Top | |||
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