PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G399000.1
Common NameB456_009G399000, LOC105766627
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 305aa    MW: 33764.4 Da    PI: 6.5082
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G399000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.11.6e-3284186199
                         EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+k ltpsdv+k++rlv+pk++ae++    g ++ ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+++F+++++
  Gorai.009G399000.1  84 FEKPLTPSDVGKLNRLVIPKQHAEKYfplgGDSSDKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKQLDAGDIILFQRHRT 174
                         99***************************966777899*************************************************9888 PP

                         SEE..EEEEE-S CS
                  B3  88 sefelvvkvfrk 99 
                         ++ +l+++++r+
  Gorai.009G399000.1 175 DGDRLFIGWRRR 186
                         9999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.2E-4278188IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-3081185IPR015300DNA-binding pseudobarrel domain
CDDcd100178.69E-2982176No hitNo description
PfamPF023621.8E-2984186IPR003340B3 DNA binding domain
PROSITE profilePS5086314.14284187IPR003340B3 DNA binding domain
SMARTSM010197.2E-2684187IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEPTQTPPSS KLHNPSSISL ENSPWTSHFY PSMFLSSIHA PRHFNLNHDD DEELDDQTST  60
LNTLNPKPNP PENHQLGHET EPMFEKPLTP SDVGKLNRLV IPKQHAEKYF PLGGDSSDKG  120
LLLSFEDESG KCWRFRYSYW NSSQSYVLTK GWSRYVKEKQ LDAGDIILFQ RHRTDGDRLF  180
IGWRRRGAAV VVAPAATDGG NAMMENDSGG GGGGNGGWNN RGLYQRYPHL GHIQGDLEAN  240
VPYQPDCLHA GSIVQNQATA AGNPKRLVRL FGVNLECHQL DESPPSTPAS SMVSSQGPTA  300
HQFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-50791863113B3 domain-containing transcription factor NGA1
5os9_B1e-50791863113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012441607.10.0PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ9FNI34e-65Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A0D2QVR10.0A0A0D2QVR1_GOSRA; Uncharacterized protein
STRINGGorai.009G399000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.13e-59B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]