PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G398700.1
Common NameB456_009G398700, LOC105766626
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 436aa    MW: 48308 Da    PI: 6.4093
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G398700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP63.39.3e-204196358
                 TCP  3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpa 58
                        ++++ + ++h kv+gRdRR+R++++c   +F L++e G+ ++++ti+WLlqq  p 
  Gorai.009G398700.1 41 KRRRYKGDRHIKVDGRDRRIRIPLTCCSGLFRLTREMGHRTNGETIQWLLQQTRPD 96
                        4566688*********************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136915.58146100IPR017887Transcription factor TCP subgroup
PfamPF036347.7E-174695IPR005333Transcription factor, TCP
SuperFamilySSF563172.35E-56121402IPR003010Carbon-nitrogen hydrolase
Gene3DG3DSA:3.60.110.101.8E-58121398IPR003010Carbon-nitrogen hydrolase
CDDcd075641.86E-107122402No hitNo description
PROSITE profilePS5026334.41122423IPR003010Carbon-nitrogen hydrolase
PfamPF007959.6E-47123395IPR003010Carbon-nitrogen hydrolase
PROSITE patternPS009200154169IPR000132Nitrilase/cyanide hydratase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0016810Molecular Functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MDSQTQSVDQ QQQEEENEQR PFLPENAEEE GGPTSLQPSK KRRRYKGDRH IKVDGRDRRI  60
RIPLTCCSGL FRLTREMGHR TNGETIQWLL QQTRPDLVPP DPVTHPTLLF ASAPAYMEKG  120
RVRATVVQAS TVFFDTPATL DKAERLIAGS AAYGSQLVVF PEAFVGGYPR GFPFESPNED  180
NQELPKYHAS AIEVPGPEVD RLAKISCRYK VHLVMGVVEK DGFYLFSTIL FFDPVGRYLG  240
KHRKLMRSAS ECVVWCSGEK SSLPLYRTAI GKVGGLLYLD NRIPSLRTEL YAKGIQMYCA  300
PTADAREEWR ASMIHIAIEG RCFVLSANQF CRRKDYSLPL KCIDGDSNSD LLDTIVCSGG  360
SVIVSPSGTI LAGPNYQGES LISADLDLEE ITRAKLEFGE VGLGMGPDSV GWSANKPNLV  420
LYQTAVKTEA FVDLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3wuy_A2e-2912141615310Nitrilase
3wuy_B2e-2912141615310Nitrilase
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, cotyledons, leaves and flowers. {ECO:0000269|PubMed:10574458}.
Functional Description ? help Back to Top
Source Description
UniProtHighly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN). Not associated with auxin production but may be involved in cyanide detoxification. {ECO:0000269|PubMed:10574458, ECO:0000269|PubMed:11060302}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by abscisic acid or by 1-aminocyclopropane-1-carboxylic acid (ACC). {ECO:0000269|PubMed:10574458}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012441605.10.0PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4B-like isoform X2
SwissprotQ429661e-128NRL4B_TOBAC; Bifunctional nitrilase/nitrile hydratase NIT4B
TrEMBLA0A0D2TZE40.0A0A0D2TZE4_GOSRA; Uncharacterized protein
STRINGGorai.009G398700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2058756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.16e-19TCP family protein
Publications ? help Back to Top
  1. Dohmoto M,Sano J,Tsunoda H,Yamaguchi K
    Structural analysis of the TNIT4 genes encoding nitrilase-like protein from tobacco.
    DNA Res., 1999. 6(5): p. 313-7
    [PMID:10574458]
  2. Piotrowski M,Schönfelder S,Weiler EW
    The Arabidopsis thaliana isogene NIT4 and its orthologs in tobacco encode beta-cyano-L-alanine hydratase/nitrilase.
    J. Biol. Chem., 2001. 276(4): p. 2616-21
    [PMID:11060302]
  3. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]