PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G398700.1 | ||||||||
Common Name | B456_009G398700, LOC105766626 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TCP | ||||||||
Protein Properties | Length: 436aa MW: 48308 Da PI: 6.4093 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 63.3 | 9.3e-20 | 41 | 96 | 3 | 58 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpa 58 ++++ + ++h kv+gRdRR+R++++c +F L++e G+ ++++ti+WLlqq p Gorai.009G398700.1 41 KRRRYKGDRHIKVDGRDRRIRIPLTCCSGLFRLTREMGHRTNGETIQWLLQQTRPD 96 4566688*********************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 15.581 | 46 | 100 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 7.7E-17 | 46 | 95 | IPR005333 | Transcription factor, TCP |
SuperFamily | SSF56317 | 2.35E-56 | 121 | 402 | IPR003010 | Carbon-nitrogen hydrolase |
Gene3D | G3DSA:3.60.110.10 | 1.8E-58 | 121 | 398 | IPR003010 | Carbon-nitrogen hydrolase |
CDD | cd07564 | 1.86E-107 | 122 | 402 | No hit | No description |
PROSITE profile | PS50263 | 34.41 | 122 | 423 | IPR003010 | Carbon-nitrogen hydrolase |
Pfam | PF00795 | 9.6E-47 | 123 | 395 | IPR003010 | Carbon-nitrogen hydrolase |
PROSITE pattern | PS00920 | 0 | 154 | 169 | IPR000132 | Nitrilase/cyanide hydratase, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006807 | Biological Process | nitrogen compound metabolic process | ||||
GO:0016810 | Molecular Function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MDSQTQSVDQ QQQEEENEQR PFLPENAEEE GGPTSLQPSK KRRRYKGDRH IKVDGRDRRI 60 RIPLTCCSGL FRLTREMGHR TNGETIQWLL QQTRPDLVPP DPVTHPTLLF ASAPAYMEKG 120 RVRATVVQAS TVFFDTPATL DKAERLIAGS AAYGSQLVVF PEAFVGGYPR GFPFESPNED 180 NQELPKYHAS AIEVPGPEVD RLAKISCRYK VHLVMGVVEK DGFYLFSTIL FFDPVGRYLG 240 KHRKLMRSAS ECVVWCSGEK SSLPLYRTAI GKVGGLLYLD NRIPSLRTEL YAKGIQMYCA 300 PTADAREEWR ASMIHIAIEG RCFVLSANQF CRRKDYSLPL KCIDGDSNSD LLDTIVCSGG 360 SVIVSPSGTI LAGPNYQGES LISADLDLEE ITRAKLEFGE VGLGMGPDSV GWSANKPNLV 420 LYQTAVKTEA FVDLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3wuy_A | 2e-29 | 121 | 416 | 15 | 310 | Nitrilase |
3wuy_B | 2e-29 | 121 | 416 | 15 | 310 | Nitrilase |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, cotyledons, leaves and flowers. {ECO:0000269|PubMed:10574458}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Highly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN). Not associated with auxin production but may be involved in cyanide detoxification. {ECO:0000269|PubMed:10574458, ECO:0000269|PubMed:11060302}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by abscisic acid or by 1-aminocyclopropane-1-carboxylic acid (ACC). {ECO:0000269|PubMed:10574458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012441605.1 | 0.0 | PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4B-like isoform X2 | ||||
Swissprot | Q42966 | 1e-128 | NRL4B_TOBAC; Bifunctional nitrilase/nitrile hydratase NIT4B | ||||
TrEMBL | A0A0D2TZE4 | 0.0 | A0A0D2TZE4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G398700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20587 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 6e-19 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G398700.1 |
Entrez Gene | 105766626 |
Publications ? help Back to Top | |||
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