PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G394400.1 | ||||||||
Common Name | B456_009G394400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NF-YA | ||||||||
Protein Properties | Length: 249aa MW: 27008.4 Da PI: 9.0652 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 47.7 | 5e-15 | 89 | 120 | 26 | 58 |
CBFB_NFYA 26 eekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 e+k+ +k+rkpylh SRh hA+rRpRg+gGrF Gorai.009G394400.1 89 LETKV-TKARKPYLHYSRHLHAVRRPRGNGGRF 120 57899.9*************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51152 | 17.1 | 54 | 123 | IPR001289 | Nuclear transcription factor Y subunit A |
SMART | SM00521 | 1.1E-9 | 80 | 123 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 8.3E-12 | 89 | 120 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
INQKNHTRIN SQESDCKDSG DEPMLKAVIP RQQSLQSEHG LGQPMVCAKY PYLMDQGYGV 60 FPTFGPQISG RVMLPLNLAT EDGPIYAALE TKVTKARKPY LHYSRHLHAV RRPRGNGGRF 120 LNTKSSNTGK DGMEMMKANE GQLSRLTGSQ ISQVLQSDSG TINSYKEPNG GSSTFSGSEV 180 SSSMYSRGDL SKGIGGDSVS HFPCNNQRDQ VSVARQIILG SSHLKLFFTT LNAIALEGVV 240 EDAQLNLV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016700003.1 | 1e-134 | PREDICTED: nuclear transcription factor Y subunit A-10-like | ||||
Refseq | XP_016702219.1 | 1e-134 | PREDICTED: nuclear transcription factor Y subunit A-10-like | ||||
TrEMBL | A0A0D2SFL4 | 0.0 | A0A0D2SFL4_GOSRA; Uncharacterized protein (Fragment) | ||||
STRING | Gorai.009G394400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3008 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.3 | 2e-31 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G394400.1 |
Publications ? help Back to Top | |||
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