PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G373000.1 | ||||||||
Common Name | B456_009G373000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TCP | ||||||||
Protein Properties | Length: 402aa MW: 43857.1 Da PI: 6.7323 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 117.2 | 2.1e-36 | 36 | 155 | 2 | 112 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasec.eaessss 80 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai+el+++ + ++ ++e+ + Gorai.009G373000.1 36 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDELAELppwnpldatisT----KKPnNQEDLNT 122 79**************************************************************998888754431....12222333333 PP TCP 81 sasnsssg.....kaaksaa.kskksqksaasalnlak 112 s++++++ + a ++++ ++++ nl++ Gorai.009G373000.1 123 STATNNEFhienlA-----AgSGSQCVQQHEMGDNLNN 155 33333332333220.....2233333333333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.4E-33 | 36 | 140 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.187 | 38 | 96 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MGENHHQAAA TSSRLRIKHV GGEIVEVQGG HIVRSTGRKD RHSKVCTAKG PRDRRVRLSA 60 HTAIQFYDVQ DRLGYDRPSK AVDWLIKKAK SAIDELAELP PWNPLDATIS TKKPNNQEDL 120 NTSTATNNEF HIENLAAGSG SQCVQQHEMG DNLNNNSGFL PASLVSDEIA DTMKSFFPLG 180 ASSETPPSSS LQFQDYPPDL LSRTSSHSQD LRLSLQSFPE PILLHHHEHH AAATAQAHHS 240 ESVLFSGTTP LAGFDGSNAG WEHHQQQQPV EIGRFQRLFA WNSSGGDAGG GNGGGFIFGT 300 PSQQSLPLTF GQNSQFFSQR GPLQSSNTPL VRAWIDQPID EHHHHHQIPQ NIHQQAALSS 360 MGFTTSGVYS GFRVPSRIQG QEEEHDSIAN KLSSASSDSH H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 7e-21 | 43 | 96 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 7e-21 | 43 | 96 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.1650 | 0.0 | flower| flowering |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in cotyledons during embryogenesis. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012441282.1 | 0.0 | PREDICTED: transcription factor TCP4-like isoform X2 | ||||
Swissprot | Q8LPR5 | 1e-113 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A0D2TY72 | 0.0 | A0A0D2TY72_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8J4K1 | 0.0 | A0A1U8J4K1_GOSHI; transcription factor TCP4-like isoform X2 | ||||
TrEMBL | A0A1U8JAL7 | 0.0 | A0A1U8JAL7_GOSHI; transcription factor TCP4-like isoform X1 | ||||
STRING | Gorai.009G373000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2408 | 27 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 1e-108 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G373000.1 |