PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.009G367100.5 | ||||||||
Common Name | B456_009G367100, LOC105766340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 183aa MW: 20875.9 Da PI: 9.7529 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 154.7 | 8.1e-48 | 21 | 159 | 20 | 170 |
YABBY 20 tilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevp 110 il v+vP ++lf++vtvrCG Ct+l s+n+a + q +a ++ ++ + ++e ++ ++++ +++ + ++ + +++e Gorai.009G367100.5 21 KILQVNVPCSCLFETVTVRCGQCTNLCSINMAASFQSRAGKEI--------QVPNYTSSEYRIELGSSSSKGKNKLPKRPRIMNTTTQER- 102 69****************************9999888887774........334444444444444333333333333333323333333. PP YABBY 111 rvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 v+rPP+kr r+Ps yn+fikeeiqrik +nPdishreafs+aaknWa fP+ihfgl Gorai.009G367100.5 103 ---VVNRPPDKRHRAPSLYNQFIKEEIQRIKLNNPDISHREAFSTAAKNWARFPHIHFGL 159 ...369****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.5E-53 | 21 | 159 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.06E-6 | 99 | 152 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 183 aa Download sequence Send to blast |
MNKDDISSIF STDYLNLFLI KILQVNVPCS CLFETVTVRC GQCTNLCSIN MAASFQSRAG 60 KEIQVPNYTS SEYRIELGSS SSKGKNKLPK RPRIMNTTTQ ERVVNRPPDK RHRAPSLYNQ 120 FIKEEIQRIK LNNPDISHRE AFSTAAKNWA RFPHIHFGLM LETATQPKLN DDSTEHFQQL 180 LK* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HQ526781 | 8e-61 | HQ526781.1 Gossypium herbaceum clone NBRI_A_1939 simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012441207.1 | 1e-135 | PREDICTED: axial regulator YABBY 5-like isoform X4 | ||||
Swissprot | Q8GW46 | 3e-62 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A0D2TY16 | 1e-134 | A0A0D2TY16_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G367100.1 | 1e-117 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G26580.2 | 1e-61 | YABBY family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.009G367100.5 |
Entrez Gene | 105766340 |
Publications ? help Back to Top | |||
---|---|---|---|
|