PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G367100.3 | ||||||||
Common Name | B456_009G367100, LOC105766340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | YABBY | ||||||||
Protein Properties | Length: 184aa MW: 20768.8 Da PI: 9.1598 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 181.4 | 5e-56 | 7 | 160 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 s++eq+Cy+ Cn Cn ilav+vP ++lf++vtvrCG Ct+l s+n+a + q +a ++ ++ + ++e ++ ++++ +++ Gorai.009G367100.3 7 SAPEQLCYIPCNLCNIILAVNVPCSCLFETVTVRCGQCTNLCSINMAASFQSRAGKEI--------QVPNYTSSEYRIELGSSSSKGKNKL 89 789******************************************9999888887774........3344444444444443333333333 PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + ++ + +++e v+rPP+kr r+Ps yn+fikeeiqrik +nPdishreafs+aaknWa fP+ihfgl Gorai.009G367100.3 90 PKRPRIMNTTTQER----VVNRPPDKRHRAPSLYNQFIKEEIQRIKLNNPDISHREAFSTAAKNWARFPHIHFGL 160 33333323333333....369****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 7.6E-63 | 8 | 160 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.07E-6 | 100 | 153 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MSSLNNSAPE QLCYIPCNLC NIILAVNVPC SCLFETVTVR CGQCTNLCSI NMAASFQSRA 60 GKEIQVPNYT SSEYRIELGS SSSKGKNKLP KRPRIMNTTT QERVVNRPPD KRHRAPSLYN 120 QFIKEEIQRI KLNNPDISHR EAFSTAAKNW ARFPHIHFGL MLETATQPKL NDDSTEHFQQ 180 LLK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ526781 | 8e-61 | HQ526781.1 Gossypium herbaceum clone NBRI_A_1939 simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012441201.1 | 1e-136 | PREDICTED: axial regulator YABBY 5-like isoform X2 | ||||
Swissprot | Q8GW46 | 2e-74 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A0D2SEH0 | 1e-134 | A0A0D2SEH0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G367100.1 | 1e-135 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 7e-74 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G367100.3 |
Entrez Gene | 105766340 |
Publications ? help Back to Top | |||
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