PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G357700.1
Common NameB456_009G357700, LOC105766255
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 301aa    MW: 33774 Da    PI: 8.0502
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G357700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.56.5e-50211473128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                         pGfrFhPtdeelv +yL++kv++k+l++ + ik++diyk++PwdLpk + +++e e yfF++r +ky+++ r+nr+t sg+Wkatg dk++
  Gorai.009G357700.1  21 PGFRFHPTDEELVGFYLQRKVDNKPLKI-DLIKQIDIYKFDPWDLPKaSSREGEIESYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKPI 110
                         9***************************.99***************51444444599********************************** PP

                 NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +s+ +++ +glkktLv+y+g+a kg+ktdW+mhe+rl
  Gorai.009G357700.1 111 YSNgGSACIGLKKTLVYYRGTAGKGTKTDWMMHEFRL 147
                         **955666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100552.29319182IPR003441NAC domain
SuperFamilySSF1019411.05E-5420182IPR003441NAC domain
PfamPF023652.5E-2521147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MNIVVQACAD NKDEEEDAPL PGFRFHPTDE ELVGFYLQRK VDNKPLKIDL IKQIDIYKFD  60
PWDLPKASSR EGEIESYFFC RRGRKYRNSI RPNRVTGSGF WKATGIDKPI YSNGGSACIG  120
LKKTLVYYRG TAGKGTKTDW MMHEFRLPNS THTNASNATF SNPKSLALEE AEVWTICRIF  180
KRSVSHRKYT PDWREIASNR TSTATPSPQI ICSMGLGSNI HETYIAFGSP LVQSCDEKPG  240
FSGMNGRNQW HAEQLSIAQP SSMASSSSFS SCPGNNDFFT LANWDELKSV VEFAFDPFSV  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-462118819171NO APICAL MERISTEM PROTEIN
1ut4_B8e-462118819171NO APICAL MERISTEM PROTEIN
1ut7_A8e-462118819171NO APICAL MERISTEM PROTEIN
1ut7_B8e-462118819171NO APICAL MERISTEM PROTEIN
3swm_A8e-462118822174NAC domain-containing protein 19
3swm_B8e-462118822174NAC domain-containing protein 19
3swm_C8e-462118822174NAC domain-containing protein 19
3swm_D8e-462118822174NAC domain-containing protein 19
3swp_A8e-462118822174NAC domain-containing protein 19
3swp_B8e-462118822174NAC domain-containing protein 19
3swp_C8e-462118822174NAC domain-containing protein 19
3swp_D8e-462118822174NAC domain-containing protein 19
4dul_A8e-462118819171NAC domain-containing protein 19
4dul_B8e-462118819171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00353DAPTransfer from AT3G12910Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472090.0KC847209.1 Gossypium hirsutum NAC domain protein NAC32 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313850.10.0transcription factor JUNGBRUNNEN 1-like
RefseqXP_012441089.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK553e-86NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A0D2QTM80.0A0A0D2QTM8_GOSRA; Uncharacterized protein
TrEMBLW6JB990.0W6JB99_GOSHI; NAC domain protein NAC32
STRINGGorai.009G357700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.14e-97NAC family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  3. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  4. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  5. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  6. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]