PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G338500.2
Common NameB456_009G338500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 305aa    MW: 34043.2 Da    PI: 6.779
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G338500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.32.6e-13225250126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +ktelC+ +++t  C+yGd C+FaHg
  Gorai.009G338500.2 225 FKTELCNKWQETAACPYGDHCQFAHG 250
                         79***********************8 PP
2zf-CCCH17.38.7e-06263287125
                         --S---SGGGGTS.--TTTTT-SS-S CS
             zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaH 25 
                         ykte Cr  ++ G  C+yG rC+F H
  Gorai.009G338500.2 263 YKTEVCRVILA-GdVCPYGHRCHFRH 287
                         9******5555.77**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.7E-18219257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-10221256IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793224252IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6224251IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-10225250IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-8258293IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-11258291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.976262290IPR000571Zinc finger, CCCH-type
SMARTSM003560.0026262289IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MQSDGSTLYG DVLSKQPKDK ENEGDYSPSA VAATSLFDLC HPRHVMQQHQ DMINRHNLCL  60
TRLHEASKEV EALRQENTAL RSVNRDLNKQ LSTLIQASMQ NHFATSDYNA TPYELLNEFQ  120
GLCLGGDGGG VGEEEVSDEC PTSMMEGAGD VERVMLPKSI SVRSNGYLKM MSSQNSQNAG  180
VSRRRKYRGP TRSGNASQLS GAVYVQGGKK EEEPLELEVY NQGMFKTELC NKWQETAACP  240
YGDHCQFAHG IEELRPVIRH PRYKTEVCRV ILAGDVCPYG HRCHFRHALT EQEKFMGSLK  300
PPTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A6e-21225291470Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5774602e-65JX577460.1 Gossypium hirsutum clone NBRI_GE9285 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017604732.10.0PREDICTED: zinc finger CCCH domain-containing protein 15-like
SwissprotQ9C9F56e-89C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A0D2UY070.0A0A0D2UY07_GOSRA; Uncharacterized protein
STRINGGorai.009G338500.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.22e-83C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]