PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G338500.1
Common NameB456_009G338500, LOC105766034
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 306aa    MW: 34171.4 Da    PI: 6.9314
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G338500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.32.6e-13226251126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +ktelC+ +++t  C+yGd C+FaHg
  Gorai.009G338500.1 226 FKTELCNKWQETAACPYGDHCQFAHG 251
                         79***********************8 PP
2zf-CCCH17.38.7e-06264288125
                         --S---SGGGGTS.--TTTTT-SS-S CS
             zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaH 25 
                         ykte Cr  ++ G  C+yG rC+F H
  Gorai.009G338500.1 264 YKTEVCRVILA-GdVCPYGHRCHFRH 288
                         9******5555.77**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.7E-18220258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-10222257IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6225252IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793225253IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-10226251IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-11259292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-8259294IPR000571Zinc finger, CCCH-type
SMARTSM003560.0026263290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.976263291IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MQSDGSTLYG DVLSKQPKDK ENEGDYSPSA VAATSLFDLC HPRHVMQQHQ DMINRHNLCL  60
TRLHEASKEV EALRQENTAL RSVNRDLNKQ LSTLIQASMQ NHFATSDYNA TPYELLNEFQ  120
GLCLGGDGGG VGEEEVSDEC PTSMMEGAGD VERVMLPKSI SVRSNGYLKM MSSQNSQNAG  180
VSRRRKYRGP TRSGNASQLS GAKVYVQGGK KEEEPLELEV YNQGMFKTEL CNKWQETAAC  240
PYGDHCQFAH GIEELRPVIR HPRYKTEVCR VILAGDVCPY GHRCHFRHAL TEQEKFMGSL  300
KPPTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A6e-21226292470Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5774604e-67JX577460.1 Gossypium hirsutum clone NBRI_GE9285 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440782.10.0PREDICTED: zinc finger CCCH domain-containing protein 15-like
SwissprotQ9C9F58e-90C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A0D2TZK70.0A0A0D2TZK7_GOSRA; Uncharacterized protein
STRINGGorai.009G338500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72872339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.27e-86C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]