PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G328200.8
Common NameB456_009G328200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 426aa    MW: 48447.8 Da    PI: 6.5731
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G328200.8genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.6e-13112152445
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         W ++E+ ll++a++++G g+W+ +a+++g +++  qc+++++
  Gorai.009G328200.8 112 WNADEEILLLEAIEMYGFGNWAEVAEHVG-TKSKSQCIDHYN 152
                         *****************************.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250241.4E-12541418IPR016827Transcriptional adaptor 2
SMARTSM002918.8E-104892IPR000433Zinc finger, ZZ-type
SuperFamilySSF578508.36E-1452115No hitNo description
PROSITE profilePS5013510.6775295IPR000433Zinc finger, ZZ-type
CDDcd023355.05E-2752100No hitNo description
PfamPF005691.1E-85286IPR000433Zinc finger, ZZ-type
PROSITE patternPS0135705481IPR000433Zinc finger, ZZ-type
SuperFamilySSF466892.47E-13105158IPR009057Homeodomain-like
PROSITE profilePS5129322.521107159IPR017884SANT domain
SMARTSM007171.8E-12108157IPR001005SANT/Myb domain
PfamPF002491.7E-13111152IPR001005SANT/Myb domain
CDDcd001671.82E-12112152No hitNo description
Gene3DG3DSA:1.10.10.602.4E-9112154IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009409Biological Processresponse to cold
GO:0016573Biological Processhistone acetylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MGRSRTVSRP TEEDLNQRSK RKKTASGSVD NVELPSAGLG QVPSEAKGPA LYHCNYCNKD  60
LSGMVRIKCA VCPDFDLCVE CFSVGAEITP HKCNHPYRVM DNLSFPLICP DWNADEEILL  120
LEAIEMYGFG NWAEVAEHVG TKSKSQCIDH YNAIYMNSPC FPLPDLSHVM GKSREELLAM  180
AKGNGLVKKE FTTHGELTLK QESPAGAKVK YETPRKEDPA HQSSSSLTGE IGSHIDSRSG  240
GNTFLGTGKK TSNMAQIKDG IKVEEPQADR SIGEKKPRVF TEEEPSMTEL SGYNFKRQEF  300
EIEYDNDAEQ LLADMEFKDT DTKAERELKL RVLHIYSKRL DERKRRKDFI LERNLLYPDP  360
FERNLSPEEK EIYQRYKVFM RFHSKEEHRE LLKSVIEEHR IVKRIQELQV NLSAGSSSCW  420
LPNRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw3_E3e-37481671120Transcriptional adapter 2
6cw3_G3e-37481671120Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1342347RKRRKD
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448317.10.0PREDICTED: transcriptional adapter ADA2a-like
SwissprotQ75LL61e-176TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A0D2UXF30.0A0A0D2UXF3_GOSRA; Transcriptional adapter
STRINGGorai.009G328200.10.0(Gossypium raimondii)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]