PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G328200.5 | ||||||||
Common Name | B456_009G328200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 426aa MW: 48447.8 Da PI: 6.5731 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.4 | 1.6e-13 | 112 | 152 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W ++E+ ll++a++++G g+W+ +a+++g +++ qc+++++ Gorai.009G328200.5 112 WNADEEILLLEAIEMYGFGNWAEVAEHVG-TKSKSQCIDHYN 152 *****************************.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF025024 | 1.4E-125 | 41 | 418 | IPR016827 | Transcriptional adaptor 2 |
SMART | SM00291 | 8.8E-10 | 48 | 92 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF57850 | 8.36E-14 | 52 | 115 | No hit | No description |
PROSITE profile | PS50135 | 10.677 | 52 | 95 | IPR000433 | Zinc finger, ZZ-type |
CDD | cd02335 | 5.05E-27 | 52 | 100 | No hit | No description |
Pfam | PF00569 | 1.1E-8 | 52 | 86 | IPR000433 | Zinc finger, ZZ-type |
PROSITE pattern | PS01357 | 0 | 54 | 81 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF46689 | 2.47E-13 | 105 | 158 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 22.521 | 107 | 159 | IPR017884 | SANT domain |
SMART | SM00717 | 1.8E-12 | 108 | 157 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-13 | 111 | 152 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.82E-12 | 112 | 152 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-9 | 112 | 154 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0016573 | Biological Process | histone acetylation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MGRSRTVSRP TEEDLNQRSK RKKTASGSVD NVELPSAGLG QVPSEAKGPA LYHCNYCNKD 60 LSGMVRIKCA VCPDFDLCVE CFSVGAEITP HKCNHPYRVM DNLSFPLICP DWNADEEILL 120 LEAIEMYGFG NWAEVAEHVG TKSKSQCIDH YNAIYMNSPC FPLPDLSHVM GKSREELLAM 180 AKGNGLVKKE FTTHGELTLK QESPAGAKVK YETPRKEDPA HQSSSSLTGE IGSHIDSRSG 240 GNTFLGTGKK TSNMAQIKDG IKVEEPQADR SIGEKKPRVF TEEEPSMTEL SGYNFKRQEF 300 EIEYDNDAEQ LLADMEFKDT DTKAERELKL RVLHIYSKRL DERKRRKDFI LERNLLYPDP 360 FERNLSPEEK EIYQRYKVFM RFHSKEEHRE LLKSVIEEHR IVKRIQELQV NLSAGSSSCW 420 LPNRC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6cw3_E | 3e-37 | 48 | 167 | 1 | 120 | Transcriptional adapter 2 |
6cw3_G | 3e-37 | 48 | 167 | 1 | 120 | Transcriptional adapter 2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 342 | 347 | RKRRKD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012448317.1 | 0.0 | PREDICTED: transcriptional adapter ADA2a-like | ||||
Swissprot | Q75LL6 | 1e-176 | TADA2_ORYSJ; Transcriptional adapter ADA2 | ||||
TrEMBL | A0A0D2UXF3 | 0.0 | A0A0D2UXF3_GOSRA; Transcriptional adapter | ||||
STRING | Gorai.009G328200.1 | 0.0 | (Gossypium raimondii) |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G328200.5 |
Publications ? help Back to Top | |||
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