PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G323600.2 | ||||||||
Common Name | B456_009G323600, LOC105771300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 284aa MW: 32227 Da PI: 6.4367 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.1 | 6.3e-18 | 86 | 139 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Gorai.009G323600.2 86 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 139 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.8 | 2.3e-41 | 85 | 177 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr+y+ +k+en++L++++++L++e+ Gorai.009G323600.2 85 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYELIKAENDALQAHNKKLQAEI 175 69**************************************************************************************999 PP HD-ZIP_I/II 92 ke 93 ++ Gorai.009G323600.2 176 MA 177 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.98E-20 | 64 | 143 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.329 | 81 | 141 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-17 | 84 | 145 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.8E-15 | 86 | 139 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.92E-16 | 86 | 142 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-19 | 88 | 148 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.1E-5 | 112 | 121 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 116 | 139 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.1E-5 | 121 | 137 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.1E-14 | 141 | 181 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MSCNGMAFFP ANFMLQTPHH DHEDHQRSTN SINQILPSCT APQEFHGVAS FLGKRSMSSY 60 SGIDHVCEEA NGEDDISDDG SQAGEKKRRL NMEQVKTLEK NFELGNKLEP ERKMQLARAL 120 GLQPRQIAIW FQNRRARWKT KQLEKDYDLL KRQYELIKAE NDALQAHNKK LQAEIMALKG 180 REASECINLN KETEGCSSNR SENSSDVKLD NDRPPAAAAT ISRPARTLFP AGLFQAASSN 240 SSHDDHHQPP QMVKEESLIT NMFCTIEEQT GFWPWLEQQQ HFN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 141 | RRARWKTKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012448177.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-13-like | ||||
Swissprot | Q8LC03 | 1e-117 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A0D2QRT6 | 0.0 | A0A0D2QRT6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G323600.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 1e-118 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G323600.2 |
Entrez Gene | 105771300 |
Publications ? help Back to Top | |||
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