PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G319300.2

Common Name

B456_009G319300, LOC105771320

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 318aa MW: 34636.8 Da PI: 9.4154

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G319300.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.3	8e-39	71	130	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ Gorai.009G319300.2 71 ASALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 130 6789*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	54	119	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.0E-32	73	128	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.609	74	128	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	76	112	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009640	Biological Process	photomorphogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MVFSSLPSYL DPPNWQQRPP FLQQPGVITS ENHHNSQLPP PAPPSAAGGA GGIRPGSMVE 60 RAKLAKIPHP ASALKCPRCE STNTKFCYFN NYSLSQPRHF CKTCRRYWTR GGALRNVPVG 120 GGCRRNKRSK GRKRSKSPSV TSERQTGSSS SATTINSNGC TEMLSHVNPA AAPQLPPLAP 180 LHHLGDYNSG DIEVTFGNET RIMSSNGVGL MLPDWRSAQQ VQQFPFLTSL DHPQTGLYSF 240 VNETMEPTGY AGQQQLLGSK PLESTITESS AVKMEETPSP WLNQSRNFLG NSGNDDQYWF 300 GGGGNPWTDL SGFIKEK*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00407	DAP	Transfer from AT3G55370	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012448196.1	0.0	PREDICTED: dof zinc finger protein DOF3.6-like isoform X1
TrEMBL	A0A0D2UX04	0.0	A0A0D2UX04_GOSRA; Uncharacterized protein
STRING	Gorai.009G319300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	2e-41	DNA binding with one finger 2.4

Link Out ? help Back to Top
Phytozome	Gorai.009G319300.2
Entrez Gene	105771320

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]