PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G315600.1

Common Name

B456_009G315600, LOC105771006

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YB

Protein Properties

Length: 180aa MW: 19299.5 Da PI: 5.731

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G315600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	184.6	7.8e-58	30	127	1	98
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 vreqdr+lPian+srimkk+lP+n+ki+kdak+tvqecvsefisf+tseasdkcq+ekrktingddllwa+atlGfedy+eplk+yl++yr Gorai.009G315600.1 30 VREQDRYLPIANISRIMKKALPSNGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKIYLARYR 120 69*************************************************************************************** PP NF-YB 92 elegekk 98 eleg++k Gorai.009G315600.1 121 ELEGDTK 127 **975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	9.3E-55	26	134	IPR009072	Histone-fold
SuperFamily	SSF47113	6.21E-41	33	141	IPR009072	Histone-fold
Pfam	PF00808	1.2E-28	36	100	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.5E-21	64	82	No hit	No description
PROSITE pattern	PS00685	0	67	83	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.5E-21	83	101	No hit	No description
PRINTS	PR00615	3.5E-21	102	120	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MADGMGGGPT SPAGGSHESG GEHSSPQSTV REQDRYLPIA NISRIMKKAL PSNGKIAKDA 60 KDTVQECVSE FISFITSEAS DKCQKEKRKT INGDDLLWAM ATLGFEDYIE PLKIYLARYR 120 ELEGDTKGSA RGGDGSFKRD AAGALPAQNP QFSIQGSLNY INSQAQGQHM IIPSMQGNE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	3e-48	29	121	1	93	NF-YB
4awl_B	3e-48	29	121	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	3e-48	29	121	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers and mature rosettes. {ECO:0000269\|PubMed:11250072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447849.1	1e-131	PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1
Refseq	XP_012447850.1	1e-131	PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1
Refseq	XP_012447851.1	1e-131	PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1
Refseq	XP_016685850.1	1e-131	PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1
Refseq	XP_016685851.1	1e-131	PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1
Refseq	XP_016685852.1	1e-131	PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1
Refseq	XP_016685853.1	1e-131	PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1
Refseq	XP_016748326.1	1e-131	PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1
Refseq	XP_016748327.1	1e-131	PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1
Refseq	XP_016748328.1	1e-131	PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1
Refseq	XP_017607610.1	1e-131	PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1
Swissprot	Q8VYK4	5e-80	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A0D2QRI7	1e-130	A0A0D2QRI7_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8J678	1e-130	A0A1U8J678_GOSHI; nuclear transcription factor Y subunit B-1-like isoform X1
STRING	Gorai.009G315600.1	1e-131	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1480	27	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	7e-77	nuclear factor Y, subunit B8

Link Out ? help Back to Top
Phytozome	Gorai.009G315600.1
Entrez Gene	105771006

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]