PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G309200.2 | ||||||||
Common Name | B456_009G309200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 240aa MW: 26987.3 Da PI: 4.3617 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.6 | 7.2e-10 | 120 | 166 | 4 | 50 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 k++rr +NR AA rsR+RKk +++ Le k+ Le+e ++L l+ Gorai.009G309200.2 120 AKKQRRQLRNRDAAVRSRERKKVYVKDLEMKSRYLEGECRRLSRVLQ 166 69************************************999987665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.7E-6 | 114 | 181 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 4.4E-12 | 115 | 179 | No hit | No description |
PROSITE profile | PS50217 | 9.852 | 119 | 176 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 6.2E-10 | 120 | 176 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.81E-11 | 121 | 179 | No hit | No description |
CDD | cd14704 | 3.82E-18 | 122 | 173 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 124 | 139 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0030968 | Biological Process | endoplasmic reticulum unfolded protein response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MEEINWDTLL LEVDLPDFGD ILDNEPEPVT EPPPQPCSTQ NSDEEPAVSS WIGEIEKVLM 60 EDDNFDHRVE TQPVSDDDFL ADLLVDSPPS SGGDVAGVDG ADLHKQSQTH TDVDKDDPIA 120 KKQRRQLRNR DAAVRSRERK KVYVKDLEMK SRYLEGECRR LSRVLQCFIA ENQALRLTLH 180 KGCAFDASST KQESAVLLLG MKWFYMSSVL AFAVFGLILY GQESRLLIFT NGPCYSYQA* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00019 | PBM | Transfer from AT1G42990 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012447655.1 | 1e-144 | PREDICTED: bZIP transcription factor 60-like | ||||
TrEMBL | A0A0D2TUX4 | 1e-177 | A0A0D2TUX4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G309200.1 | 1e-143 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G42990.1 | 3e-25 | basic region/leucine zipper motif 60 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G309200.2 |
Publications ? help Back to Top | |||
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