PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G309200.1

Common Name

B456_009G309200, LOC105770843

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 284aa MW: 31579.9 Da PI: 4.6455

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G309200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.3	9.3e-10	120	166	4	50
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 k++rr +NR AA rsR+RKk +++ Le k+ Le+e ++L l+ Gorai.009G309200.1 120 AKKQRRQLRNRDAAVRSRERKKVYVKDLEMKSRYLEGECRRLSRVLQ 166 69************************************999987665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.7E-6	114	181	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.0E-12	115	179	No hit	No description
PROSITE profile	PS50217	9.852	119	176	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.3E-10	120	176	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.13E-11	121	179	No hit	No description
CDD	cd14704	1.75E-17	122	173	No hit	No description
PROSITE pattern	PS00036	0	124	139	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0030968	Biological Process	endoplasmic reticulum unfolded protein response
GO:0005634	Cellular Component	nucleus
GO:0005789	Cellular Component	endoplasmic reticulum membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MEEINWDTLL LEVDLPDFGD ILDNEPEPVT EPPPQPCSTQ NSDEEPAVSS WIGEIEKVLM 60 EDDNFDHRVE TQPVSDDDFL ADLLVDSPPS SGGDVAGVDG ADLHKQSQTH TDVDKDDPIA 120 KKQRRQLRNR DAAVRSRERK KVYVKDLEMK SRYLEGECRR LSRVLQCFIA ENQALRLTLH 180 KGCAFDASST KQESAVLLLE SLLLGSLLWF LGIMCLFTLP ILPKSVLEAV PMANEETQGP 240 ERVAPRGAGS NRVGPSFVKS RRCKASRGKM KEISCFMGIL VPF*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00019	PBM	Transfer from AT1G42990	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447655.1	0.0	PREDICTED: bZIP transcription factor 60-like
TrEMBL	A0A0D2SBE6	0.0	A0A0D2SBE6_GOSRA; Uncharacterized protein
STRING	Gorai.009G309200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4634	28	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G42990.1	3e-29	basic region/leucine zipper motif 60

Link Out ? help Back to Top
Phytozome	Gorai.009G309200.1
Entrez Gene	105770843

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]