PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G304600.1

Common Name

B456_009G304600, LOC105771215

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 421aa MW: 48580.4 Da PI: 6.3472

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G304600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.7	1.9e-29	104	189	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea Gorai.009G304600.1 104 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMaEEYGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKNYRFFKQLEA 189 8***********************************7788************************97..66678*****85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.841	97	162	IPR017877	Myb-like domain
Pfam	PF13837	8.7E-21	103	190	No hit	No description
CDD	cd12203	3.96E-20	103	169	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MEMGDQYGLP DFQRLLTRRT HFPASLLPQP SESPYLAHHR NMAPSPPPYH EPPYVLSNGD 60 IAMPSGLLRF NTTGATGFTA EASASAAVGG GGWSLGNIDC GNSRWPRQET LTLLEIRSRL 120 DSKFKEANQK GPLWDEVSRI MAEEYGYQRS GKKCREKFEN LYKYYKKTKE GKAGRQDGKN 180 YRFFKQLEAI YGETSNQSSV PETNNINTVP SNLPEKYHES MQEQKMSESL GFSDPEFEAS 240 SSEKMNDDEC ELSGIASMVN QMGVKKGWKT KVKDFVDSQM KRLIDSQDVW MERMLKVIEE 300 KEKERVLREE EWRRQEAARF DKEHELWVKE RAWIEARDAS LMAALRTLRP LTAKTQNEIN 360 ANRWTEHEIL ERRLQENGYS TRQSTWEDIE AKMVNLGYGY EHEANNAECY KKRKEDYLSS 420 *

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MEMGDQYGLP DFQRLLTRRT HFPASLLPQP SESPYLAHHR NMAPSPPPYH EPPYVLSNGD  60
IAMPSGLLRF NTTGATGFTA EASASAAVGG GGWSLGNIDC GNSRWPRQET LTLLEIRSRL  120
DSKFKEANQK GPLWDEVSRI MAEEYGYQRS GKKCREKFEN LYKYYKKTKE GKAGRQDGKN  180
YRFFKQLEAI YGETSNQSSV PETNNINTVP SNLPEKYHES MQEQKMSESL GFSDPEFEAS  240
SSEKMNDDEC ELSGIASMVN QMGVKKGWKT KVKDFVDSQM KRLIDSQDVW MERMLKVIEE  300
KEKERVLREE EWRRQEAARF DKEHELWVKE RAWIEARDAS LMAALRTLRP LTAKTQNEIN  360
ANRWTEHEIL ERRLQENGYS TRQSTWEDIE AKMVNLGYGY EHEANNAECY KKRKEDYLSS  420
*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ395075	1e-119	GQ395075.1 Gossypium hirsutum cultivar Delta Opal clone MONCS2098 SSR marker DPL0591 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012448079.1	0.0	PREDICTED: trihelix transcription factor PTL-like
TrEMBL	A0A0D2TUB6	0.0	A0A0D2TUB6_GOSRA; Uncharacterized protein
STRING	Gorai.009G304600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2767	28	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	5e-79	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G304600.1
Entrez Gene	105771215

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]