PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G289600.1

Common Name

B456_009G289600, LOC105767612

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 455aa MW: 51731.3 Da PI: 7.4973

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G289600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	310.5	3.7e-95	71	452	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lLl A+ v++++ + a L++l + +s gd++qR++ayf+ +L arl+ s y+ + ++t+ +ee+ a++ ++ vsP++ Gorai.009G289600.1 71 LIHLLLITATSVDENNVNSALDNLTQLYQSVSLMGDSVQRVVAYFADGLVARLLTRKSPFYDMIMKEPTA----EEEFLAFTCLYRVSPYY 157 689**************************************************999999888886....78889999****** PP GRAS 92 kfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gv 174 +f+h+taNqaI ea e+e +++H+iDfd+ +G+QWp+L+q+L++++ ++ slR+Tg+g+ s el+et++rL +fA+ + ++ Gorai.009G289600.1 158 QFAHFTANQAIIEAYEKEeefnnRALHVIDFDVAYGFQWPSLIQSLSEKAsgGNRISLRLTGFGA----SFAELQETENRLVSFAKGFrNL 244 ************9977777788*******************9634455*****....9*************9758 PP GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265 fef+ l l +l +Lr k++E++aVnlv++l +l +s+++++ +Lk v+s +P +v +veqe ++ sFl rf+e+l+y++ Gorai.009G289600.1 245 VFEFQGL----LRGSKLTNLRKKKNETVAVNLVFHLNTLN-NSMKISD----TLKSVRSHRPSIVMLVEQEGGRSPRSFLSRFMESLHYFA 326 ****8....7777889**************9996.6666666....*********************************** PP GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegae....rrerhetlekWrerleeaGFkpvplsekaakqaklllr........kv 344 a+fdsl+ lp es er ++E+ lg+ei++++ c ++e + r e++e+W++r+e+ GF+ +ls+k qaklll+ ++ Gorai.009G289600.1 327 AMFDSLDDCLPLESAERLSIEKNHLGKEIKSMINCDKDEennkSSSRYEKMETWKSRMESHGFEGTKLSSKCLIQAKLLLKitthycplQC 417 *******************************887633336789****************************983332222212 PP GRAS 345 k...sdgyrveee..sgslvlgWkdrpLvsvSaWr 374 + + g+rv e+ ++l lgW+dr L+++SaW+ Gorai.009G289600.1 418 EgevNGGFRVFERdeAKALSLGWQDRCLLTASAWQ 452 21222347777653355667************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	48.84	45	419	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-92	71	452	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MEDEPLNLSL AIMADPGGEK INRKRKRRVP LPSSYEGCEG KIFKLLQVRE EMLKLDYKRK 60 GVVEDGKALH LIHLLLITAT SVDENNVNSA LDNLTQLYQS VSLMGDSVQR VVAYFADGLV 120 ARLLTRKSPF YDMIMKEPTA EEEFLAFTCL YRVSPYYQFA HFTANQAIIE AYEKEEEFNN 180 RALHVIDFDV AYGFQWPSLI QSLSEKASGG NRISLRLTGF GASFAELQET ENRLVSFAKG 240 FRNLVFEFQG LLRGSKLTNL RKKKNETVAV NLVFHLNTLN NSMKISDTLK SVRSHRPSIV 300 MLVEQEGGRS PRSFLSRFME SLHYFAAMFD SLDDCLPLES AERLSIEKNH LGKEIKSMIN 360 CDKDEENNKS SSRYEKMETW KSRMESHGFE GTKLSSKCLI QAKLLLKITT HYCPLQCEGE 420 VNGGFRVFER DEAKALSLGW QDRCLLTASA WQCV*

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MEDEPLNLSL AIMADPGGEK INRKRKRRVP LPSSYEGCEG KIFKLLQVRE EMLKLDYKRK  60
GVVEDGKALH LIHLLLITAT SVDENNVNSA LDNLTQLYQS VSLMGDSVQR VVAYFADGLV  120
ARLLTRKSPF YDMIMKEPTA EEEFLAFTCL YRVSPYYQFA HFTANQAIIE AYEKEEEFNN  180
RALHVIDFDV AYGFQWPSLI QSLSEKASGG NRISLRLTGF GASFAELQET ENRLVSFAKG  240
FRNLVFEFQG LLRGSKLTNL RKKKNETVAV NLVFHLNTLN NSMKISDTLK SVRSHRPSIV  300
MLVEQEGGRS PRSFLSRFME SLHYFAAMFD SLDDCLPLES AERLSIEKNH LGKEIKSMIN  360
CDKDEENNKS SSRYEKMETW KSRMESHGFE GTKLSSKCLI QAKLLLKITT HYCPLQCEGE  420
VNGGFRVFER DEAKALSLGW QDRCLLTASA WQCV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-55	79	451	27	378	Protein SCARECROW
5b3h_A	7e-55	79	451	26	377	Protein SCARECROW
5b3h_D	7e-55	79	451	26	377	Protein SCARECROW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	22	27	RKRKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012442637.1	0.0	PREDICTED: scarecrow-like protein 21
TrEMBL	A0A0D2SA13	0.0	A0A0D2SA13_GOSRA; Uncharacterized protein
STRING	Gorai.009G289600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15761	9	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G04890.1	3e-59	SCARECROW-like 21

Link Out ? help Back to Top
Phytozome	Gorai.009G289600.1
Entrez Gene	105767612

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]