PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G289000.1
Common NameB456_009G289000, LOC105770321
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 422aa    MW: 44684.3 Da    PI: 7.4635
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G289000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.39.4e-4196188295
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaa 91 
                         +++k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+s+ s++  +
  Gorai.009G289000.1  96 PAAKRPTKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTISAP--S 184
                         6789*****************************************************************9998777777777733333..2 PP

                 TCP  92 ksaa 95 
                         +++a
  Gorai.009G289000.1 185 SKSA 188
                         2222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.2E-38102203IPR005333Transcription factor, TCP
PROSITE profilePS5136928.325102156IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MLIMESQSNK SSNSSEHHHH HHGQKQEASL QLVSRDGQPQ AAAGAAHGTS SHQAQAQTQA  60
QPQAPGHHVS FMGSISNQIG VPSSSPTSTS SLAKPPAAKR PTKDRHTKVD GRGRRIRMPA  120
VCAARVFQLT RELGHKSDGE TIEWLLQQAE PAIIAATGTG TIPANFSTLN VSLRSSGSTI  180
SAPSSKSAPL SFHSALGFYN SNGDEARRIG NSTAMLGFHH QLYPQLLHPE THMRSGSNPN  240
DNYATKPFRD DLFKETSQHN AETGAIDANS PKPERTGMPE QEPGLFQTAN VMPAPAMWAV  300
APATTNGGNA FWMLPVGGGA TAASATVPEA QMWTFPAHYS GGGRGNPVQL GSMILQQQQA  360
GGQQLGLGVT ETNMGLLGSG MNVYSNNNRV GLKMNLEQQH HHENQTQGSD SGDENPATDS  420
Q*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.5130.0seedling
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487424750.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00614PBMTransfer from AT1G35560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5252791e-141HQ525279.1 Gossypium herbaceum clone NBRI_A2_462 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446921.10.0PREDICTED: transcription factor TCP23
SwissprotQ9LQF02e-85TCP23_ARATH; Transcription factor TCP23
TrEMBLA0A0D2S9Z90.0A0A0D2S9Z9_GOSRA; Uncharacterized protein
STRINGGorai.009G289000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35560.19e-70TCP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]