PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G288800.4 | ||||||||
Common Name | B456_009G288800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 228aa MW: 25842.6 Da PI: 8.5477 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.5 | 2.7e-06 | 24 | 48 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk+F ks Lk+H +H Gorai.009G288800.4 24 YVCQevGCGKVFEFKSKLKKHEDSH 48 99*******************9888 PP | |||||||
2 | zf-C2H2 | 16.7 | 2e-05 | 116 | 140 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C +Fs+ksnL++H + H Gorai.009G288800.4 116 KCNfeGCLHTFSTKSNLRQHVKAvH 140 79999***************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-7 | 20 | 48 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.15E-5 | 21 | 48 | No hit | No description |
PROSITE profile | PS50157 | 11.053 | 24 | 53 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.01 | 24 | 48 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 26 | 48 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.4 | 56 | 81 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 58 | 81 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 9.9E-4 | 58 | 78 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 18 | 84 | 105 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 3.69E-8 | 97 | 153 | No hit | No description |
SMART | SM00355 | 0.0021 | 115 | 140 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.635 | 115 | 145 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.2E-6 | 116 | 140 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 117 | 140 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.1E-4 | 141 | 168 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 8.7 | 146 | 172 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 148 | 172 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MKRHLKEFHD EESSDLDAGS QKQYVCQEVG CGKVFEFKSK LKKHEDSHVK LDSVEAFCSE 60 PGCMKYFTNE QCLKAHVLSS HAYINCQICG AKQLKKNIKR HLRSHEPGGV ESERIKCNFE 120 GCLHTFSTKS NLRQHVKAVH EELKPFACSF FGCGMRFSYK HVRDNHEKSG CHVYTPGNFL 180 ETDEQFRSKP RGGLKRTCPT VEMLVRKRVT PPQMDATMDL GPAPACS* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Both isoforms 1 and 2 transcripts are expressed in seedlings and both TFIIIA and TFIIIA-C are present at similar ratios in 10-day-old seedlings (at protein level). In correlation with the reorganization of 5S rDNA chromatin to a mature state, full-length isoform 1 protein TFIIIA with transcriptional activity accumulates and permits de novo transcription of 5S rRNA. Isoforms 1 and 2 transcripts accumulate in various tissues of the reproductive phase, including flowers and siliques, but only isoform 2 is present in mature seeds. In flowers, both TFIIIA and TFIIIA-C are present at similar ratios (at protein level). Very low amounts of TFIIIA are found in extracts from fresh siliques compared to TFIIIA-C. The amount of full-length TFIIIA protein progressively increases from fresh siliques to seeds concomitant with lower proportions of the shorter TFIIIA-C protein (at protein level) thus leading to 5S rRNA accumulation in the seed. {ECO:0000269|PubMed:22353599}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, flowers, siliques and seeds. {ECO:0000269|PubMed:22353599}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012447055.1 | 1e-167 | PREDICTED: zinc finger protein 782 isoform X1 | ||||
Refseq | XP_012447056.1 | 1e-168 | PREDICTED: transcription factor IIIA isoform X2 | ||||
Swissprot | Q84MZ4 | 5e-94 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | A0A0D2UV94 | 1e-168 | A0A0D2UV94_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G288800.1 | 1e-167 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.1 | 6e-97 | transcription factor IIIA |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G288800.4 |
Publications ? help Back to Top | |||
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