PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G281000.1

Common Name

B456_009G281000

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 354aa MW: 38963.9 Da PI: 7.6042

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G281000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.6	3.5e-19	42	89	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv+++k +G g+W++ ++ g++R++k+c++rw +yl Gorai.009G281000.1 42 KGPWTPEEDQKLVQYIKNHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 89 79********************************************97 PP
2	Myb_DNA-binding	53.3	6.3e-17	95	140	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E++ +++++ lG++ W++Ia +++ gRt++++k++w+++l Gorai.009G281000.1 95 RGKFSQDEEQTILHLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 140 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-26	33	92	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.718	37	89	IPR017930	Myb domain
SuperFamily	SSF46689	2.77E-31	39	136	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-15	41	91	IPR001005	SANT/Myb domain
Pfam	PF00249	8.5E-18	42	89	IPR001005	SANT/Myb domain
CDD	cd00167	1.84E-12	44	89	No hit	No description
PROSITE profile	PS51294	26.688	90	144	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-27	93	145	IPR009057	Homeodomain-like
SMART	SM00717	3.7E-16	94	142	IPR001005	SANT/Myb domain
Pfam	PF00249	8.0E-16	95	140	IPR001005	SANT/Myb domain
CDD	cd00167	5.25E-12	97	140	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MVVKEAKQVI KQFGKPKKEE KKDKKQKIMG RSPCCDEDGL KKGPWTPEED QKLVQYIKNH 60 GHGSWRALPK LAGLNRCGKS CRLRWTNYLR PDIKRGKFSQ DEEQTILHLH SILGNKWSAI 120 ATHLPGRTDN EIKNFWNTHL KKKLIQMGID PMTHQPRTDI FSSLPHLMVL ASLRDLLENP 180 LQAEAAQLAK LQYLQFLLQS SAASMASNDN YGGATTIGAE DMEGFNLLNS TQFSVGNNET 240 SQLLHYPPQQ QVPFGLQTSF NNEKKTSSNS DEMGHCSNFI VSQGDNLIDH SVAASCPLQS 300 SPTSPPATAG AADASVSNVP GDASSASSYN GGAASPYWSD LYFDDSLMQD IIS*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MVVKEAKQVI KQFGKPKKEE KKDKKQKIMG RSPCCDEDGL KKGPWTPEED QKLVQYIKNH  60
GHGSWRALPK LAGLNRCGKS CRLRWTNYLR PDIKRGKFSQ DEEQTILHLH SILGNKWSAI  120
ATHLPGRTDN EIKNFWNTHL KKKLIQMGID PMTHQPRTDI FSSLPHLMVL ASLRDLLENP  180
LQAEAAQLAK LQYLQFLLQS SAASMASNDN YGGATTIGAE DMEGFNLLNS TQFSVGNNET  240
SQLLHYPPQQ QVPFGLQTSF NNEKKTSSNS DEMGHCSNFI VSQGDNLIDH SVAASCPLQS  300
SPTSPPATAG AADASVSNVP GDASSASSYN GGAASPYWSD LYFDDSLMQD IIS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-30	40	144	5	108	B-MYB
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269\|PubMed:24902892, ECO:0000269\|PubMed:25482809}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX578383	2e-66	JX578383.1 Gossypium hirsutum clone NBRI_GE10395 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012446706.1	0.0	PREDICTED: transcription factor WER-like
Swissprot	Q9S9Z2	1e-117	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A0D2QPG0	0.0	A0A0D2QPG0_GOSRA; Uncharacterized protein
STRING	Gorai.009G281000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	1e-99	myb domain protein 93

Link Out ? help Back to Top
Phytozome	Gorai.009G281000.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]