PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G279200.2
Common NameB456_009G279200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 251aa    MW: 27056.2 Da    PI: 7.8807
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G279200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.51.4e-16173209135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg ++  Tp++Rrgp+g+++LCnaCGl+++ kg+
  Gorai.009G279200.2 173 CTHCGISSnsTPMMRRGPSGPRSLCNACGLFWANKGT 209
                         *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009795.9E-875110IPR010399Tify domain
PROSITE profilePS5132012.4875110IPR010399Tify domain
PfamPF062002.9E-979109IPR010399Tify domain
PfamPF062031.4E-10141172IPR010402CCT domain
PROSITE profilePS510178.641141183IPR010402CCT domain
SMARTSM004012.1E-14167220IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.831167228IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.8E-12170220No hitNo description
CDDcd002021.65E-14172219No hitNo description
Gene3DG3DSA:3.30.50.101.5E-15172213IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440173200IPR000679Zinc finger, GATA-type
PfamPF003201.7E-14173209IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MYGQSQPMNV PAPVTSSGVD VRDDVSASAS VDNHQNVSYD AHPLNNGVGV EGVHTDPIYA  60
TAEAASAADL AIVQRVDDAS QLTLSFRGQV YVFDAITPNK FHAVLLLLGG CELTSGPHGV  120
EMSSQNLRSG VDFPRSNQPH RAASLDRFRQ KRKERCFDKK VRYGVRQEVA LRCTHCGISS  180
NSTPMMRRGP SGPRSLCNAC GLFWANKGTL RDLPKKTRDH SVPPVEHRDS EANDSDSGTA  240
IPTQSNIVSV *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447633.11e-171PREDICTED: GATA transcription factor 25-like
SwissprotQ9LRH61e-57GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A0D2S9E50.0A0A0D2S9E5_GOSRA; Uncharacterized protein
STRINGGorai.009G279200.11e-171(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.33e-59GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]