PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G279200.1 | ||||||||
Common Name | B456_009G279200, LOC105770829 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GATA | ||||||||
Protein Properties | Length: 283aa MW: 30616.9 Da PI: 7.827 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 51.3 | 1.6e-16 | 205 | 241 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp++Rrgp+g+++LCnaCGl+++ kg+ Gorai.009G279200.1 205 CTHCGISSnsTPMMRRGPSGPRSLCNACGLFWANKGT 241 *****99999************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 5.9E-8 | 75 | 110 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 12.48 | 75 | 110 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.4E-9 | 79 | 109 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 12.471 | 141 | 183 | IPR010402 | CCT domain |
Pfam | PF06203 | 6.1E-16 | 141 | 183 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 10.646 | 199 | 260 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.1E-15 | 199 | 252 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.98E-12 | 203 | 252 | No hit | No description |
CDD | cd00202 | 3.61E-14 | 204 | 251 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.1E-15 | 204 | 245 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 205 | 232 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.0E-14 | 205 | 241 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MYGQSQPMNV PAPVTSSGVD VRDDVSASAS VDNHQNVSYD AHPLNNGVGV EGVHTDPIYA 60 TAEAASAADL AIVQRVDDAS QLTLSFRGQV YVFDAITPNK FHAVLLLLGG CELTSGPHGV 120 EMSSQNLRSG VDFPRSNQPH RAASLDRFRQ KRKERCFDKK VRYGVRQEVA LRMQRNKGQF 180 TSSKKSDRTD SCSTQDNDNL PDSSCTHCGI SSNSTPMMRR GPSGPRSLCN ACGLFWANKG 240 TLRDLPKKTR DHSVPPVEHR DSEANDSDSG TAIPTQSNIV SV* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012447633.1 | 0.0 | PREDICTED: GATA transcription factor 25-like | ||||
Swissprot | Q9LRH6 | 9e-74 | GAT25_ARATH; GATA transcription factor 25 | ||||
TrEMBL | A0A0D2TSS4 | 0.0 | A0A0D2TSS4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G279200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5006 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24470.3 | 2e-75 | GATA-type zinc finger protein with TIFY domain |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G279200.1 |
Entrez Gene | 105770829 |
Publications ? help Back to Top | |||
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