PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G277500.1
Common NameB456_009G277500, LOC105770125
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 605aa    MW: 65347.4 Da    PI: 7.3895
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G277500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.91e-24214258145
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                         d+epgrCrRtDGKkWRCsr++++g+k+CErH++rgr+rsrk++e 
  Gorai.009G277500.1 214 DPEPGRCRRTDGKKWRCSRDAVAGQKYCERHMNRGRHRSRKPVEG 258
                         79****************************************985 PP
2QLQ56.86.6e-20143179137
                 QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                         +++T+ Q+++L++Q+l++Ky++an+PvP++Ll++i+k
  Gorai.009G277500.1 143 GPYTPCQWMELEHQALIFKYILANVPVPSNLLLPIRK 179
                         599********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.0E-11143179IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.4E-14144178IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.113144179IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.947214258IPR014977WRC domain
PfamPF088794.6E-21215257IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MDFGVVGLEG FIGSETATGF SSLGSDHQET NQKSYGSGGL FKQERSCNNE DELRSSKLAK  60
IHDDFSCYSK PLMFHHRNTL LRSNASIFFD EQEEQQMLSF SAPKPDALSA DRSSKNVTFP  120
HIYLTGYNNG GFNGANMHGV CKGPYTPCQW MELEHQALIF KYILANVPVP SNLLLPIRKS  180
LDSTDFSSFS GELFRPNTSM GWGAFQLGFS NNTDPEPGRC RRTDGKKWRC SRDAVAGQKY  240
CERHMNRGRH RSRKPVEGQP SHSVTATAAT TSKLMPNVSS SSASAVGPVG GSGEPNSLTS  300
ARQKYENLQL GGTSNLSAAA SLNRSILNKD TVGEKMPYNA AGLSMISPNG DLKSKENPFL  360
IPKQPISYEE NLRNGFGVVS SGELNPSHKS SSMINSRNFG SSQDLTSQET DSQQSFRRFI  420
DDRPKSRSHC SAISWPELDV QSYRTQLSIS IPMAASDFTS TTSSPNNESL TSSPLRLSRE  480
FNPINIGLGV GNVVNESNQK QANWIPVSWG TSIGGPLGEA LHSNGSTMVD LKNSSILNLM  540
TESSENSPLV GSSPTGVLQK TTFASLSNSS AGSSPENNKT HEGVSHCNDL LGSNLVESSS  600
LPAT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446636.10.0PREDICTED: growth-regulating factor 1-like
TrEMBLA0A0D2UV060.0A0A0D2UV06_GOSRA; Uncharacterized protein
STRINGGorai.009G277500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14542886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.16e-88growth-regulating factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]