PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G276400.1
Common NameB456_009G276400, LOC105770114
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 285aa    MW: 31073.2 Da    PI: 9.2682
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G276400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.14.7e-191257147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +g+W++eEde l+++v+ +G+++W+++++ ++ gR++k+c++rw + 
  Gorai.009G276400.1 12 KGPWSPEEDEALKRLVQTYGSRNWSLVSKSIP-GRSGKSCRLRWCNQ 57
                        79******************************.***********985 PP
2Myb_DNA-binding55.51.3e-1766108347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++T+eEd+ +++a++++G++ W+tIar ++ gRt++ +k++w++ 
  Gorai.009G276400.1  66 PFTPEEDDTIARAHTRFGNK-WATIARFLN-GRTDNAIKNHWNST 108
                         89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.599762IPR017930Myb domain
SuperFamilySSF466893.07E-329105IPR009057Homeodomain-like
SMARTSM007174.7E-171160IPR001005SANT/Myb domain
PfamPF002497.2E-191257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-261364IPR009057Homeodomain-like
CDDcd001671.67E-161456No hitNo description
SMARTSM007179.7E-1463111IPR001005SANT/Myb domain
PROSITE profilePS5129419.31764113IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-2365112IPR009057Homeodomain-like
CDDcd001672.64E-1166109No hitNo description
PfamPF002491.4E-1466108IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MACTRKDIDR IKGPWSPEED EALKRLVQTY GSRNWSLVSK SIPGRSGKSC RLRWCNQLSP  60
DVEHRPFTPE EDDTIARAHT RFGNKWATIA RFLNGRTDNA IKNHWNSTLK RKCSSMTDDM  120
NDDSPQPLKK SASLNTGNGG LGLYLSSRSP SGSDLSDLSL PIASPVTITG SLVPSTQTAS  180
SATDPPTLLT LSLPGSDTSE ITDLGSVSNS FPSSTLVAEP ATVPALKLQM EKQFLNAELL  240
AVMQEMIRKE VRKYMSGSES NGLCFRTEAI RKAVVKRIGI SKIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-39111133105C-Myb DNA-Binding Domain
1msf_C1e-39111133105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4591613e-64AJ459161.1 Gossypium hirsutum partial myb131 gene, clone pGhMYB131.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446627.10.0PREDICTED: transcription factor MYB44-like
SwissprotO231602e-87MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A0D2TSQ20.0A0A0D2TSQ2_GOSRA; Uncharacterized protein
STRINGGorai.009G276400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-67myb domain protein 73
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]