PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G271100.1
Common NameB456_009G271100, LOC105770918
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 226aa    MW: 25903.5 Da    PI: 9.2574
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G271100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.77.5e-29959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k ien++nrqvt+skRrng++KKA+EL vLCda+v++i+fs+tgkl+e++s
  Gorai.009G271100.1  9 KLIENSTNRQVTYSKRRNGLFKKANELTVLCDARVSIIMFSTTGKLHEFIS 59
                        569**********************************************86 PP
2K-box94.22.2e-3171169199
               K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                         yqk+ g + +++++e++q++l++Lk+ ++nL++e+R+++G++L++Ls+++L  Leq++e+s++ iR++K+++l +qi++++kk ++++e++
  Gorai.009G271100.1  71 YQKTLGIDIWNTHYEKMQEQLKQLKEVNRNLRKEIRRRMGDCLNDLSIEDLGALEQEMESSVTLIRDRKYRVLSNQIDTSRKKVRNVEEIH 161
                         78899999*********************************************************************************** PP

               K-box  92 kaLrkkle 99 
                         k+L ++le
  Gorai.009G271100.1 162 KNLLHELE 169
                         ***99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.455161IPR002100Transcription factor, MADS-box
SMARTSM004325.0E-39160IPR002100Transcription factor, MADS-box
CDDcd002657.88E-39280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.72E-37395IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-27323IPR002100Transcription factor, MADS-box
PfamPF003195.4E-251157IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-273859IPR002100Transcription factor, MADS-box
PfamPF014868.1E-2182168IPR002487Transcription factor, K-box
PROSITE profilePS5129715.9284174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MARGKIQIKL IENSTNRQVT YSKRRNGLFK KANELTVLCD ARVSIIMFST TGKLHEFISP  60
STTTKQVIDQ YQKTLGIDIW NTHYEKMQEQ LKQLKEVNRN LRKEIRRRMG DCLNDLSIED  120
LGALEQEMES SVTLIRDRKY RVLSNQIDTS RKKVRNVEEI HKNLLHELES LKEDPYGLVD  180
NGGDYDTLIG YQNGGPRIFA LRLQPNHPSL HSGGGSDLTT YPLLD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.19400.0flower| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488051670.0
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2364400.0HM236440.1 Gossypium hirsutum MADS24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313871.11e-166floral homeotic protein PMADS 1-like
RefseqNP_001314589.11e-166floral homeotic protein PMADS 1-like
RefseqXP_012447738.11e-166PREDICTED: floral homeotic protein PMADS 1
SwissprotP237061e-117DEFA_ANTMA; Floral homeotic protein DEFICIENS
TrEMBLA0A0D2QNY91e-165A0A0D2QNY9_GOSRA; Uncharacterized protein
TrEMBLU5L2141e-165U5L214_GOSHI; MADS box protein MADS53
STRINGGorai.009G271100.11e-166(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52612750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-100MIKC_MADS family protein
Publications ? help Back to Top
  1. Schwarz-Sommer Z, et al.
    Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development.
    EMBO J., 1992. 11(1): p. 251-63
    [PMID:1346760]
  2. Sommer H, et al.
    Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors.
    EMBO J., 1990. 9(3): p. 605-13
    [PMID:1968830]
  3. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  4. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  5. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]