PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G269300.1

Common Name

B456_009G269300, LOC105766881

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 210aa MW: 22904.2 Da PI: 11.0992

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G269300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.1	4.6e-14	140	199	4	63
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 + r + ++kNRe+A sR+RK+a+ ++Le++v+ L++eN +L+k ++ + +l +++ Gorai.009G269300.1 140 DLRLKLMMKNRESAAQSRARKQAYKKKLEREVAYLKEENAKLRKHQKKVMAAINQLPKKN 199 568899*****************************************9999999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-10	137	201	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.553	139	195	IPR004827	Basic-leucine zipper domain
CDD	cd14707	4.85E-17	142	186	No hit	No description
SuperFamily	SSF57959	7.74E-9	142	189	No hit	No description
Pfam	PF00170	9.5E-12	142	199	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.8E-11	143	195	No hit	No description
PROSITE pattern	PS00036	0	144	159	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MEEVGKDISL SSLNGISLQG KHGTLISTAA TNPAFPSMIL QDFLATPFNN IPPTTSSGVL 60 SNEEPTFLHS LSLTPATVLR LNTGSDPLRS NPAVNNRTAI APSSLGAAHN STFQGFGSSA 120 RVFPSFCRKR AQGNNENPDD LRLKLMMKNR ESAAQSRARK QAYKKKLERE VAYLKEENAK 180 LRKHQKKVMA AINQLPKKNR LSRSLTTPF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012441887.1	1e-152	PREDICTED: protein FD-like
TrEMBL	A0A0D2TW17	1e-150	A0A0D2TW17_GOSRA; Uncharacterized protein
TrEMBL	A0A2P5R4M0	1e-150	A0A2P5R4M0_GOSBA; Uncharacterized protein
STRING	Gorai.009G269300.1	1e-151	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM28300	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35900.1	2e-33	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G269300.1
Entrez Gene	105766881

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]