PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G266700.1
Common NameB456_009G266700, LOC105769979
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 180aa    MW: 19737.5 Da    PI: 4.929
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G266700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.2e-191060155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        s y+GVr++k +g+Wv+eIr+p   gk++r++lg++ tae+Aa+a++ a++ ++g
  Gorai.009G266700.1 10 SSYRGVRQRK-WGKWVSEIREP---GKKTRIWLGSYETAEMAAAAYDVAALHFRG 60
                        67*******9.**********8...557***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.32E-231069IPR016177DNA-binding domain
CDDcd000181.89E-231070No hitNo description
PfamPF008478.9E-131060IPR001471AP2/ERF domain
SMARTSM003809.7E-391174IPR001471AP2/ERF domain
PROSITE profilePS5103223.7881168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-331169IPR001471AP2/ERF domain
PRINTSPR003671.9E-101223IPR001471AP2/ERF domain
PRINTSPR003671.9E-103450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MEHEAGVSPS SYRGVRQRKW GKWVSEIREP GKKTRIWLGS YETAEMAAAA YDVAALHFRG  60
RAARLNFPEL VDSLPRPASS RAEDVQMAAQ EAALRLSRRA KISSEVGGEL AGTGKSLGPV  120
RVGLSQSQIQ AINEFPLDSP KMWMELAGAV LLAEPMMCAV DDAEFMSDYE EILVEPIWD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-181273668ATERF1
3gcc_A3e-181273668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446432.11e-128PREDICTED: ethylene-responsive transcription factor ERF022-like
SwissprotQ9C9I22e-49ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A0D2S8T91e-126A0A0D2S8T9_GOSRA; Uncharacterized protein
STRINGGorai.009G266700.11e-127(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.14e-48ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]