PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G263200.1
Common NameB456_009G263200, LOC105771049
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 261aa    MW: 29091.1 Da    PI: 9.3348
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G263200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.4e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd++l+++++ +G g+W++ ++  g+ R++k+c++rw +yl
  Gorai.009G263200.1 14 KGAWTKEEDQRLIHYIRVHGEGSWRSLPKAAGLLRCGKSCRLRWMNYL 61
                        79******************************99************97 PP
2Myb_DNA-binding56.47e-1867111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg++T++Edel+++++ +lG++ W++Ia +++ gRt++++k++w+++
  Gorai.009G263200.1  67 RGNFTEDEDELIIKLHGLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                         89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-23564IPR009057Homeodomain-like
PROSITE profilePS5129417.256961IPR017930Myb domain
SuperFamilySSF466895.03E-3013108IPR009057Homeodomain-like
SMARTSM007172.7E-131363IPR001005SANT/Myb domain
PfamPF002495.9E-161461IPR001005SANT/Myb domain
CDDcd001679.92E-111661No hitNo description
PROSITE profilePS5129428.45262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.0E-2865117IPR009057Homeodomain-like
SMARTSM007176.8E-1766114IPR001005SANT/Myb domain
PfamPF002494.6E-1667111IPR001005SANT/Myb domain
CDDcd001673.41E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLIHYIR VHGEGSWRSL PKAAGLLRCG KSCRLRWMNY  60
LRPDLKRGNF TEDEDELIIK LHGLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLVSRG  120
IDPQSHRPLN GIAKATPTEL DFRNAPTVPK IKPITTATPS LSFKYDESQV KAKSDSLEGG  180
NCTSSGMTTD EEQPSSRPNE LNLELSIGFS INSANSAESK PKVAKPKAVC LCWQLGFQRS  240
EICSNCENTN GLFRYCTTLG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-291311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in flowers and weakly in roots and stems. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5818331e-130JX581833.1 Gossypium hirsutum clone NBRI_GE14555 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447908.10.0PREDICTED: transcription repressor MYB6-like
SwissprotP813952e-95MYB30_ANTMA; Myb-related protein 330
TrEMBLA0A0D2QNK90.0A0A0D2QNK9_GOSRA; Uncharacterized protein
STRINGGorai.009G263200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.13e-95myb domain protein 3
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]