PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G253900.1
Common NameB456_009G253900, LOC105769823
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 570aa    MW: 63891.1 Da    PI: 6.5257
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G253900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix99.82.3e-3143129187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW++qe+laL+++r++m++ +r++ lk+plWeevs+k++e g++rs+k+Ckek+en+ k++k++k+g+ ++++++++t+++fd+lea
  Gorai.009G253900.1  43 RWPRQETLALLKIRSDMDSLFRDSTLKGPLWEEVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKDGRTSKADGKTKTYRFFDELEA 129
                         8************************************************************************************85 PP
2trihelix1041.1e-32375460187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+k ev aLi++r++++ +++++  k+plWee+s++mr  g++rs+k+Ckekwen+nk++kk+ke++k r +e+s+tcpyf+ql+a
  Gorai.009G253900.1 375 RWPKVEVEALIKLRTNLDIKYQDNGPKGPLWEEISAAMRNLGYNRSAKRCKEKWENINKYFKKVKENNKTR-PEDSKTCPYFHQLDA 460
                         8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00540102IPR001005SANT/Myb domain
PROSITE profilePS500906.91142100IPR017877Myb-like domain
PfamPF138374.5E-2042129No hitNo description
CDDcd122039.21E-2642107No hitNo description
SMARTSM007172.3E-4372434IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-4374431IPR009057Homeodomain-like
PROSITE profilePS500907.399374432IPR017877Myb-like domain
CDDcd122031.25E-26375439No hitNo description
PfamPF138371.2E-22375461No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MESSMVEGSA EAATTVAGIH EGSEGEEDRG RVDEGDRSFG GNRWPRQETL ALLKIRSDMD  60
SLFRDSTLKG PLWEEVSRKL AELGYHRSAK KCKEKFENVY KYHKRTKDGR TSKADGKTKT  120
YRFFDELEAF QNLHSLHPLS PPKPQTPTPT SASVMNPTNV PQSHATVPSI NPTLSTQPVP  180
PLHSINPCFF NISSNLFSTS TSSSTTSNDD SYQGSSGKKR KWKEFFRRLT KEVIEKQEEL  240
QNKFLQTIEK CEQQRLAREE AWRVQEMARI NKEHELLVHE RSKAAAKDAA VFAFLQKVSG  300
QQPNTVQGNP QPQPQPPPPA QPMLAPLSTP PPPPVQVKQP KTHPPPTQAL NFDTSEMSNG  360
GNSAVSVSLS PSPSRWPKVE VEALIKLRTN LDIKYQDNGP KGPLWEEISA AMRNLGYNRS  420
AKRCKEKWEN INKYFKKVKE NNKTRPEDSK TCPYFHQLDA IYKDKISKNG NSLATSSPYG  480
VKPDSRSTVP LMVRPEQQWP PPQGNNHQAE TVAMMEEEAD KGNVGHNNNH TQEEEEEEEE  540
EEDGDTEDEY EGNDFELVAK TAPIGSGGE*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9640911e-119JX964091.1 Gossypium hirsutum clone NBRI_TRANS-360 microsatellite sequence.
GenBankJX9644121e-119JX964412.1 Gossypium hirsutum clone NBRI_TRANS-681 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446164.10.0PREDICTED: trihelix transcription factor GT-2-like isoform X1
RefseqXP_012446165.10.0PREDICTED: trihelix transcription factor GT-2-like isoform X2
SwissprotQ391171e-143TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A0D2S8310.0A0A0D2S831_GOSRA; Uncharacterized protein
STRINGGorai.009G253900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48492553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-133Trihelix family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]