PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G253700.1
Common NameB456_009G253700, LOC105769822
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 597aa    MW: 65897.5 Da    PI: 7.6221
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G253700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix86.82.6e-2788170185
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                         rW++qe+laL+++r++m+ ++r+++ k+plWeevs+k++e g++rs+k+Ckek+en+ k++k++k+ + +++  + +t+++ +ql
  Gorai.009G253700.1  88 RWPRQETLALLKIRSDMDVTFRDASVKGPLWEEVSRKLAELGYHRSAKKCKEKFENVFKYHKRTKDVRTGKS--DGKTYRFSNQL 170
                         8********************************************************************975..44568888776 PP
2trihelix101.95e-32421506187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+k ev+aLie+r++++ ++ ++  k+plWee+s++m++ g++r++k+Ckekwen+nk++kk+k++ kkr +e+s+tcpyf+ql+a
  Gorai.009G253700.1 421 RWPKVEVQALIELRTRLDAKYHDNGPKGPLWEEISAAMKKLGYNRNAKRCKEKWENINKYFKKVKDNHKKR-PEDSKTCPYFHQLDA 506
                         8********************************************************************98.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.5E-485147IPR001005SANT/Myb domain
CDDcd122035.59E-2587152No hitNo description
PfamPF138372.5E-1787168No hitNo description
PROSITE profilePS500906.95787145IPR017877Myb-like domain
SMARTSM007172.7E-4418480IPR001005SANT/Myb domain
PfamPF138374.5E-22420507No hitNo description
PROSITE profilePS500907.248420478IPR017877Myb-like domain
CDDcd122031.28E-26420485No hitNo description
Gene3DG3DSA:1.10.10.601.8E-4420477IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MLGGGGDTTA SVLGSGGGGT DGNVTTTAGG GGAVTMGRSG GARDGGSSEG GGVAANNMFG  60
SNGNNNNNSG DEDRVRVDEG DRCFGGNRWP RQETLALLKI RSDMDVTFRD ASVKGPLWEE  120
VSRKLAELGY HRSAKKCKEK FENVFKYHKR TKDVRTGKSD GKTYRFSNQL LALETHPSFQ  180
SPPATAAVAA PTSPPQAQPQ ATMPAPSLPN VTVPSAAALP SLPQNIVPTN INPTPTLPSF  240
PNVSADQMSN STSSSTSSDL ELEGRRKKKR KWKGFFERLM REVVHEQEEM QKKFLEALEK  300
REQERMAREE AWRMQEMARI NRERELLAKE RSVAAAKDAA LMSLLQKLSE QKNPGQPQSN  360
PLQQPQPPVS VVAAAATPAA ALSVPAPQPP PPLVPQQPML NLEVASKSDN GDHSCTPSSS  420
RWPKVEVQAL IELRTRLDAK YHDNGPKGPL WEEISAAMKK LGYNRNAKRC KEKWENINKY  480
FKKVKDNHKK RPEDSKTCPY FHQLDALYRE KNKHDSSSTQ FKPQNSVPLM VRPEQQWPPL  540
PPSDPDHQHR RDPEDLESYQ NHQDEDGNDE YEDEDEDERG EYEIVASKPV SMGTCE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264269RRKKKR
2264270RRKKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9637820.0JX963782.1 Gossypium hirsutum clone NBRI_TRANS-1010 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446163.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-140TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A0D2TVC40.0A0A0D2TVC4_GOSRA; Uncharacterized protein
STRINGGorai.009G253700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48492553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-153Trihelix family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]