PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G252800.1
Common NameB456_009G252800, LOC105771109
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Dof
Protein Properties Length: 300aa    MW: 33474.2 Da    PI: 4.5033
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G252800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1191.8e-373186661
              zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                         +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rk+++ 
  Gorai.009G252800.1 31 PNCPRCASANTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRG 86
                        58**************************************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-281576IPR003851Zinc finger, Dof-type
PfamPF027015.7E-323185IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.5093185IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103369IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MFAISESMLQ CAPRPMLAID RNWKSNAELA PNCPRCASAN TKFCYYNNYS LSQPRYFCKG  60
CRRYWTKGGS LRNVPVGGGC RKSRRGKSNR VDKNGAQVST NYSKNLTSFG THQEHMMGAT  120
TSHGDTGNQP GPATTTGSDI DLAVIFAQFL NQSTSSDQPE IILTQEWPNE GMDPWSCLEQ  180
DTNNQNESSM ELPVVHTIPE SYNMLQEMPQ VEQHLKDNSV EELLESDEIN AFGLQNLLAD  240
EMVQDVFWSN YAANTPSFEC QLQQLESFPV DDQLKISANL MAETWTSFDL SGSELFSKP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447964.10.0PREDICTED: dof zinc finger protein DOF1.2
TrEMBLA0A0D2UTS00.0A0A0D2UTS0_GOSRA; Uncharacterized protein
STRINGGorai.009G252800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64622643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21340.12e-38Dof family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]