PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G249000.1

Common Name

B456_009G249000

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 2170aa MW: 237320 Da PI: 8.986

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G249000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.2	1e-06	2024	2045	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f +tG C+ G++Ck +H++ Gorai.009G249000.1 2024 CPNFEATGSCPLGSTCKLHHPK 2045 *****************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.159	1891	1919	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.015	1892	1918	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.8	1920	1943	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.869	1923	1944	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.568	1945	1995	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	25	1945	1994	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.69	1996	2017	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1	1996	2022	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.005	2018	2046	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.41	2023	2045	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.7E-4	2024	2045	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0043484	Biological Process	regulation of RNA splicing
GO:0060149	Biological Process	negative regulation of posttranscriptional gene silencing
GO:0016607	Cellular Component	nuclear speck
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 2170 aa Download sequence Send to blast
MDPPSYIHHH HHHANHPRYV PFSPTPPLHP HRPPPQPLPP YQQSPTNLHP SRHHLPPQIR 60 PPPPPPPLPQ QNQQQTYQPL PAPPPPLPRQ QYSNHPPYNP HHPQYSSSSN FNSNPKPTHV 120 SHQFHDVPQR RLPEFDTRPD YWPENRVPRP HPVSNLDREA LYHQFDRRPA SPVIDRFMHD 180 LEGTSRFRDL ELNQREREGR VHNDRWISDR SSRDFGIVSI GFESNSNNSR FDHEATENIR 240 WGSRLREPLI ESGNDEINER DEMRVFSRKN DYCDPEAERF SDKGSGREGN HEFNRTPRKQ 300 IQKKSALLRI QKVKLSHRSR EDERPHYLGY HNEGKTGTFR GKDSVLQSDH GMDEKKREGT 360 PVELDVSFKS NSLVAKAIVT SSPASNFDSN LMPRNTKIRK LTTFDMVSSS AQPNKGSEST 420 AKLGGSTSAV KSGSGPVDSK QSEGKIKSSD TGKAQDGIRK PCSKGTKVFL RKGKVKKSPK 480 VTVTEDAPSS DKKLRPLEGK GTTPCIGSKG DGGVETSSNS VNILVGENKV GGTVKSTVSD 540 KTTATVGKSS SLKANKKKII VRKVVKKVVS SPLNLGNSEL AKKGDQLVKT DISIRRASAT 600 PVAEKRVLPL KMKVASASGD SVQGVDLECS PEESALILED DKVNEASKGT GSKKVSTDVD 660 PGSSVSPKIT RKKNSSTVAL NSSSQGESNV DHGSTNAGNS VPGLHIISNI KEDHTEKPNE 720 TITSGSFGVE DLNTRFYHNE NNINYGLSRS EDIKAHGGIV DIGSSSVAMP ISTGFDCGSS 780 SSLEKNIVCD IGDANSGSRH VCTTPSSPVV DDRAKGGLPE ANCSVGSDKM PLLPCMEETY 840 VSGGSVYGDC FNHDKSTTST PDIVYVNTGE RNHEIGYDLV LSLGFSGTGI PNAVESVECR 900 DKYAANIHKR KVGVSELDLS SSALASISVG SADVLTSANC VESTICASEI DLNPAEPMVG 960 AIGLLDVGLE HSRNKDSVLQ GSSSNNTFPE IGGSADGKSP EKKKRKISTS SSSLTSPVIS 1020 QSVVVSDIFK SAAQIPSNFT DDLLQLEPEV KVSSIDDLHA EGIDLLHVNS SVAGPSEDVG 1080 SFSDACRGNP PKIDPSAFAE SVAPSSPCLH PLELGGEQFS NGTPVSAISN HQSDAMDIEG 1140 DDRGKVLVDT SEEQNIISSE LTQCRIIPEH VSFGLDKRFA GIDADDDNHL PLKDDLPSTS 1200 NSLISGVDAN EVSATNSNDE AMPAPDILCD VGSLSNLVLS TSTCKGHLFN SEEKTEKLSY 1260 DKPVIEGSCN SSAHVSDPQH SKTILKSKDV IQTNQSSAGK AGLLPSYDSE STISLNFLSG 1320 ETQGRKPLLS HVGPKSYPTR SSFVSSASKN ATSSTKITKP RTWRRTDNSS AHPLSGNKPS 1380 LSANPMQKQM PTYIRKGNSL VRKPTPVPAP PQGSHSSSSS VYRLKSGIVD EVKKGTGPNN 1440 RADAVDLRTA GANTTFERPT TPPLSSVTKV PKHISNSSGE CTYSPLAEPS ASDFNETTTN 1500 HPSSMEINDE LKSPEDGQKT LETLNRNGSA NNLEVLNEQN ESGLIPSNEK RVTYVKPKSN 1560 QLVATSDSDH TSIFDVDKNQ SLSASSDGYY KKRKNQLIRT ALESHMKQAV TSSDDISNSV 1620 REIAAKVISS RTFGKRRSNK VVAKTHKPSK FSLVWTPHSA RLSNNDGSSL CYPKVRPQLF 1680 PWKRMAHKRS FKLNSVSSYS SSLSTIGRKM LLLRKRNTVY TRSINGFSIH KSKVLSVGGS 1740 SLKWSKSIER HSRKANEEAT LAVAEAERKK REQSTVSRTG KKGLSCHKVH GTEVRRGERI 1800 FRIGSVRYKM DSSRRSLQRI SDDASSCSAS QQSENSTKKS YVPRRLVIGN DEYVRIGNGN 1860 QLVRDPKKRT RVLASEKVRW SLHTARLRLV KKRKYCQFFT RFGKCNKDDG KCPYIHDPSK 1920 ISVCTKFLKG LCSNPNCKLT HKVIPERMPD CSYFLQGVSF LNYAFLFLIL DMQILTELLA 1980 GLCTNENCPY RHVHVNPNAS TCEGFLRGYC ADGNECRKKH SYVCPNFEAT GSCPLGSTCK 2040 LHHPKNRSKA KKSKRSMEHN TARGRYFGID ISKPKRMVSE RQQEVLEEDN ICFDGKFSDY 2100 ISLGVSDDEV GGLHQANCDE TSFGDNDSTD LQSEDLDELI KPIRIMSECK ITESFLVTES 2160 SSGKHLAIQ*

Sequence ? help Back to Top

Protein Sequence Length: 2170 aa Download sequence Send to blast

MDPPSYIHHH HHHANHPRYV PFSPTPPLHP HRPPPQPLPP YQQSPTNLHP SRHHLPPQIR  60
PPPPPPPLPQ QNQQQTYQPL PAPPPPLPRQ QYSNHPPYNP HHPQYSSSSN FNSNPKPTHV  120
SHQFHDVPQR RLPEFDTRPD YWPENRVPRP HPVSNLDREA LYHQFDRRPA SPVIDRFMHD  180
LEGTSRFRDL ELNQREREGR VHNDRWISDR SSRDFGIVSI GFESNSNNSR FDHEATENIR  240
WGSRLREPLI ESGNDEINER DEMRVFSRKN DYCDPEAERF SDKGSGREGN HEFNRTPRKQ  300
IQKKSALLRI QKVKLSHRSR EDERPHYLGY HNEGKTGTFR GKDSVLQSDH GMDEKKREGT  360
PVELDVSFKS NSLVAKAIVT SSPASNFDSN LMPRNTKIRK LTTFDMVSSS AQPNKGSEST  420
AKLGGSTSAV KSGSGPVDSK QSEGKIKSSD TGKAQDGIRK PCSKGTKVFL RKGKVKKSPK  480
VTVTEDAPSS DKKLRPLEGK GTTPCIGSKG DGGVETSSNS VNILVGENKV GGTVKSTVSD  540
KTTATVGKSS SLKANKKKII VRKVVKKVVS SPLNLGNSEL AKKGDQLVKT DISIRRASAT  600
PVAEKRVLPL KMKVASASGD SVQGVDLECS PEESALILED DKVNEASKGT GSKKVSTDVD  660
PGSSVSPKIT RKKNSSTVAL NSSSQGESNV DHGSTNAGNS VPGLHIISNI KEDHTEKPNE  720
TITSGSFGVE DLNTRFYHNE NNINYGLSRS EDIKAHGGIV DIGSSSVAMP ISTGFDCGSS  780
SSLEKNIVCD IGDANSGSRH VCTTPSSPVV DDRAKGGLPE ANCSVGSDKM PLLPCMEETY  840
VSGGSVYGDC FNHDKSTTST PDIVYVNTGE RNHEIGYDLV LSLGFSGTGI PNAVESVECR  900
DKYAANIHKR KVGVSELDLS SSALASISVG SADVLTSANC VESTICASEI DLNPAEPMVG  960
AIGLLDVGLE HSRNKDSVLQ GSSSNNTFPE IGGSADGKSP EKKKRKISTS SSSLTSPVIS  1020
QSVVVSDIFK SAAQIPSNFT DDLLQLEPEV KVSSIDDLHA EGIDLLHVNS SVAGPSEDVG  1080
SFSDACRGNP PKIDPSAFAE SVAPSSPCLH PLELGGEQFS NGTPVSAISN HQSDAMDIEG  1140
DDRGKVLVDT SEEQNIISSE LTQCRIIPEH VSFGLDKRFA GIDADDDNHL PLKDDLPSTS  1200
NSLISGVDAN EVSATNSNDE AMPAPDILCD VGSLSNLVLS TSTCKGHLFN SEEKTEKLSY  1260
DKPVIEGSCN SSAHVSDPQH SKTILKSKDV IQTNQSSAGK AGLLPSYDSE STISLNFLSG  1320
ETQGRKPLLS HVGPKSYPTR SSFVSSASKN ATSSTKITKP RTWRRTDNSS AHPLSGNKPS  1380
LSANPMQKQM PTYIRKGNSL VRKPTPVPAP PQGSHSSSSS VYRLKSGIVD EVKKGTGPNN  1440
RADAVDLRTA GANTTFERPT TPPLSSVTKV PKHISNSSGE CTYSPLAEPS ASDFNETTTN  1500
HPSSMEINDE LKSPEDGQKT LETLNRNGSA NNLEVLNEQN ESGLIPSNEK RVTYVKPKSN  1560
QLVATSDSDH TSIFDVDKNQ SLSASSDGYY KKRKNQLIRT ALESHMKQAV TSSDDISNSV  1620
REIAAKVISS RTFGKRRSNK VVAKTHKPSK FSLVWTPHSA RLSNNDGSSL CYPKVRPQLF  1680
PWKRMAHKRS FKLNSVSSYS SSLSTIGRKM LLLRKRNTVY TRSINGFSIH KSKVLSVGGS  1740
SLKWSKSIER HSRKANEEAT LAVAEAERKK REQSTVSRTG KKGLSCHKVH GTEVRRGERI  1800
FRIGSVRYKM DSSRRSLQRI SDDASSCSAS QQSENSTKKS YVPRRLVIGN DEYVRIGNGN  1860
QLVRDPKKRT RVLASEKVRW SLHTARLRLV KKRKYCQFFT RFGKCNKDDG KCPYIHDPSK  1920
ISVCTKFLKG LCSNPNCKLT HKVIPERMPD CSYFLQGVSF LNYAFLFLIL DMQILTELLA  1980
GLCTNENCPY RHVHVNPNAS TCEGFLRGYC ADGNECRKKH SYVCPNFEAT GSCPLGSTCK  2040
LHHPKNRSKA KKSKRSMEHN TARGRYFGID ISKPKRMVSE RQQEVLEEDN ICFDGKFSDY  2100
ISLGVSDDEV GGLHQANCDE TSFGDNDSTD LQSEDLDELI KPIRIMSECK ITESFLVTES  2160
SSGKHLAIQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6fbs_C	2e-16	1896	2045	41	168	Cleavage and polyadenylation specificity factor subunit 4
6fuw_C	2e-16	1896	2045	41	168	Cleavage and polyadenylation specificity factor subunit 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ393935	1e-129	GQ393935.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0900 SSR marker CGR6091 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012445973.1	0.0	PREDICTED: uncharacterized protein At1g21580
TrEMBL	A0A0D2TUZ8	0.0	A0A0D2TUZ8_GOSRA; Uncharacterized protein
STRING	Gorai.009G249000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5780	10	12

Link Out ? help Back to Top
Phytozome	Gorai.009G249000.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]