PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G233500.1

Common Name

B456_009G233500

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GeBP

Protein Properties

Length: 281aa MW: 31137.6 Da PI: 8.9796

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G233500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	70.7	3e-22	126	208	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 lfqrl+se+Dei+lL+ ++ + ak+g++p +d+++fy+fvkk i+++ KkKfk++ k ++g++ +fsk+h+q++fels Gorai.009G233500.1 126 LFQRLFSEDDEIALLKSMLAYSAKKGADPCADMNGFYDFVKKLIHID-------------KKKFKNNAGK-DKGEDRTFSKAHEQNAFELS 202 69*****************************************98.............9*****.9*************** PP DUF573 93 kkiWgs 98 k iWg+ Gorai.009G233500.1 203 KNIWGK 208 **95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.7E-10	127	172	IPR007592	Protein of unknown function DUF573
Pfam	PF04504	7.3E-7	173	207	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
EVTSSEEEEG SSTEEDDEED PKTQSTPLIQ KSRPTRKPDS ESESDTAVPI IKPIAIATKP 60 MKGILSAKKC RSSKPLASLV RASSSKRAGE FAKEKRPKKK VRKEGLAIAP VVEEVKKTGE 120 DAKKLLFQRL FSEDDEIALL KSMLAYSAKK GADPCADMNG FYDFVKKLIH IDKKKFKNNA 180 GKDKGEDRTF SKAHEQNAFE LSKNIWGKEG ISGKVESSTD KKIDELSKSF NSLLDKKFGV 240 FDMEVEVVEV GLDMVDGEKK TALEAKWRKL QMVQLAGFVE *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	94	102	KRPKKKVRK
2	95	101	RPKKKVR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ751265	2e-71	JQ751265.1 Gossypium hirsutum GL1-enhancer binding protein (GeBP) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012453830.1	1e-112	PREDICTED: mediator-associated protein 1-like isoform X2
TrEMBL	A0A0D2TPU4	0.0	A0A0D2TPU4_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.009G233500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	5e-16	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Gorai.009G233500.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]