PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G230000.1 | ||||||||
Common Name | B456_009G230000, LOC105771312 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 231aa MW: 25624.1 Da PI: 8.7141 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.4 | 1.4e-14 | 38 | 85 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++h+e+ErrRR+riN f++Lr++lP+ +K +Ka+ L ++v+++++L Gorai.009G230000.1 38 CKSHKEAERRRRQRINAHFSTLRSVLPNT-----TKTDKASLLAEVVHHVREL 85 789*************************9.....8***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.101 | 36 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.49E-14 | 36 | 90 | No hit | No description |
Pfam | PF00010 | 6.7E-12 | 38 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-14 | 39 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.58E-15 | 40 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.7E-15 | 42 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 9.81E-7 | 133 | 199 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 3.2E-8 | 134 | 197 | No hit | No description |
CDD | cd04873 | 2.19E-5 | 136 | 197 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MFPVKSFSGV ENNNSPVMLM EGEDSLKDLS ERKTMEACKS HKEAERRRRQ RINAHFSTLR 60 SVLPNTTKTD KASLLAEVVH HVRELKRQVE DVGRRDRDGC CSNSRPELDT SWPFPGECDE 120 ATLSFCDEGG KLLKATICCE DRPGLNHDLS RVIRLVQAKV VRAEMTTVGG RTKSVVVMQW 180 SGDEEQVGPL KRALKDVVEN RVSRLAQGTG SKRARVFGSN SETGHGFLVG * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012448186.1 | 1e-169 | PREDICTED: transcription factor bHLH30-like | ||||
TrEMBL | A0A0D2QLE3 | 1e-168 | A0A0D2QLE3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G230000.1 | 1e-169 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18858 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25710.1 | 1e-35 | basic helix-loop-helix 32 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G230000.1 |
Entrez Gene | 105771312 |
Publications ? help Back to Top | |||
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