PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G223200.1
Common NameB456_009G223200, LOC105770834
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 370aa    MW: 42516.5 Da    PI: 6.1056
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G223200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.4e-092963312055
                         HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Gorai.009G223200.1 296 YKWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 331
                         4679*****************************885 PP
2ELK37.93.8e-13251272122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELK++LlrKYsgyL+sLkqE+s
  Gorai.009G223200.1 251 ELKNHLLRKYSGYLSSLKQELS 272
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.7E-22107151IPR005540KNOX1
PfamPF037907.0E-23108150IPR005540KNOX1
SMARTSM012561.6E-28158209IPR005541KNOX2
PfamPF037912.7E-23162208IPR005541KNOX2
PROSITE profilePS5121311.296251271IPR005539ELK domain
SMARTSM011883.5E-7251272IPR005539ELK domain
PfamPF037892.6E-10251272IPR005539ELK domain
PROSITE profilePS5007113.086271334IPR001356Homeobox domain
SuperFamilySSF466897.27E-20272346IPR009057Homeodomain-like
SMARTSM003892.4E-13273338IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.2E-28276337IPR009057Homeodomain-like
CDDcd000862.08E-11283335No hitNo description
PfamPF059201.1E-16291330IPR008422Homeobox KN domain
PROSITE patternPS000270309332IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEEYNQLNEN STPRGNFLYA TPVLASNSSP YGRGSSGSNV SNQQVEMPLI SFQFQSSECY  60
QSEVHPIVKT EASTSQHGQK FHYPLLREHQ AAVHHQQDRN ESFSEAEAIK AKIIAHPQCS  120
NLLEAYMDCQ KVGAPPDVVA RLAAVRQEFE ARQRSSVTSR DTSKDPELDQ FMEAYYDMLV  180
KYREELTRPI QEALDFMRRI EAQLNMLTNA PVRIFNSDEK CEGVASSEED QENSGGETEL  240
PEFDPRVEDR ELKNHLLRKY SGYLSSLKQE LSKKKKKGKL PKEARQKLLS WWELHYKWPY  300
PSESEKVALA ESTGLDQKQI NNWFINQRKR HWKPSEDMQF MVMDGLHPQN AALYMDGHYM  360
GDGPYRLGP*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed only in the stems.
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447641.10.0PREDICTED: homeobox protein knotted-1-like 2
RefseqXP_012447642.10.0PREDICTED: homeobox protein knotted-1-like 2
SwissprotO041350.0KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A0D2URZ20.0A0A0D2URZ2_GOSRA; Uncharacterized protein
STRINGGorai.009G223200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65662335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-140KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]