PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G222200.1

Common Name

B456_009G222200, LOC105769370

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRF

Protein Properties

Length: 611aa MW: 65642.7 Da PI: 8.1137

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G222200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.1	1.8e-24	230	274	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Gorai.009G222200.1 230 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 274 79****************************************985 PP
2	QLQ	54.4	3.8e-19	160	196	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ +n+ +P++Ll +i+k Gorai.009G222200.1 160 GPFTPSQWMELEHQALIYKYITSNVLIPSNLLIPIRK 196 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	5.9E-11	160	196	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.0E-13	161	195	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21.961	161	196	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.663	230	274	IPR014977	WRC domain
Pfam	PF08879	7.3E-21	231	273	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence Send to blast
MDFGVVGLEG FVGSDTATTT TTTTTTAGFT SLAADPEAKQ KWYGSGFLKQ ERSGNNEDDW 60 RSLKLAKFDD FSTSKAALHN HRNTLLRSNF SIFSDGQHQQ QQMLSFSAPK SDALSVDTAS 120 QSVAFPYFQL TSPAYTRNTG YNTGGFNGAN MHGVLAGGRG PFTPSQWMEL EHQALIYKYI 180 TSNVLIPSNL LIPIRKSLDS ANFSLFSGGL LRPNTLGWGA FHLGFSNNTD PEPGRCRRTD 240 GKKWRCSRDA VADQKYCERH MNRGRHRSRK PVEGQSGHSA AAIAPTKLMP TVSSSASVLG 300 PTGGSGESNS LAIAQQQFKH SQPATASNLS AAATLNRLLL SKDTVGDTAP GLTMTSVTGD 360 LKSKENPFLI PKQQNSYEHH SRTEFGLVSS DSLLNPSHKS SALIKCRNFT SQETESQHSL 420 RQFMDECSKT QSDRSAISWP EIDVQSDRTQ LSISVPMAAS DYISFTSSTN NDKVTLSPLR 480 LSREFDPIHM GLGVGSVIND SNQRQANWIP ISWEASMGGP LGEVLHSTNS STGECKSSSA 540 LNLMTEGWDS SPRLGSSPTG VLQKTSFGSL SNSSAGSSPT AEHNKTHEGA SLCNNLLGSA 600 LVQSSSLPAS *

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence Send to blast

MDFGVVGLEG FVGSDTATTT TTTTTTAGFT SLAADPEAKQ KWYGSGFLKQ ERSGNNEDDW  60
RSLKLAKFDD FSTSKAALHN HRNTLLRSNF SIFSDGQHQQ QQMLSFSAPK SDALSVDTAS  120
QSVAFPYFQL TSPAYTRNTG YNTGGFNGAN MHGVLAGGRG PFTPSQWMEL EHQALIYKYI  180
TSNVLIPSNL LIPIRKSLDS ANFSLFSGGL LRPNTLGWGA FHLGFSNNTD PEPGRCRRTD  240
GKKWRCSRDA VADQKYCERH MNRGRHRSRK PVEGQSGHSA AAIAPTKLMP TVSSSASVLG  300
PTGGSGESNS LAIAQQQFKH SQPATASNLS AAATLNRLLL SKDTVGDTAP GLTMTSVTGD  360
LKSKENPFLI PKQQNSYEHH SRTEFGLVSS DSLLNPSHKS SALIKCRNFT SQETESQHSL  420
RQFMDECSKT QSDRSAISWP EIDVQSDRTQ LSISVPMAAS DYISFTSSTN NDKVTLSPLR  480
LSREFDPIHM GLGVGSVIND SNQRQANWIP ISWEASMGGP LGEVLHSTNS STGECKSSSA  540
LNLMTEGWDS SPRLGSSPTG VLQKTSFGSL SNSSAGSSPT AEHNKTHEGA SLCNNLLGSA  600
LVQSSSLPAS *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX588890	9e-79	JX588890.1 Gossypium hirsutum clone NBRI_GE23454 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012445422.1	0.0	PREDICTED: growth-regulating factor 1-like
TrEMBL	A0A0D2TP85	0.0	A0A0D2TP85_GOSRA; Uncharacterized protein
STRING	Gorai.009G222200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1454	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-113	growth-regulating factor 1

Link Out ? help Back to Top
Phytozome	Gorai.009G222200.1
Entrez Gene	105769370

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]