PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.009G218800.1 | ||||||||
Common Name | B456_009G218800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 235aa MW: 26043.5 Da PI: 8.4851 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 90.3 | 2.4e-28 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C + Cvl+ + p++q +++ +++k+FG+s +l+l++++pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++ Gorai.009G218800.1 2 SCNGCRVLRKGCRETCVLRSSLrwiesPEAQGNATLFLAKFFGRSDLLSLISSVPESQRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWH 92 6****************************************************************************************** PP DUF260 87 leqlkaelall 97 ++q++++++l+ Gorai.009G218800.1 93 ICQAAVDTVLR 103 ****9998776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.324 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.1E-24 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 235 aa Download sequence Send to blast |
MSCNGCRVLR KGCRETCVLR SSLRWIESPE AQGNATLFLA KFFGRSDLLS LISSVPESQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHICQAAVDT VLRGGSLRPV SEISAGVWRP 120 SCDESSDRFC GDESYHFPSR YAESNPLMRM MMMDNQSASA ASDLSLSLTT TKSGNGRRAG 180 RRYEEEKKKA KTMSMYSEES EITASESNEY EGRQERKILK LFRSFLISRR SCSE* |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012445483.1 | 1e-163 | PREDICTED: LOB domain-containing protein 38-like | ||||
Swissprot | Q9SN23 | 2e-65 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A0D2TTK8 | 1e-170 | A0A0D2TTK8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G218800.1 | 1e-171 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM821 | 28 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37540.1 | 4e-65 | LOB domain-containing protein 39 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.009G218800.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|