PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G207400.9
Common NameB456_009G207400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 272aa    MW: 30459.5 Da    PI: 8.32
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G207400.9genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.95.7e-16155236185
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f  v++p +v ++  + +p   +++h +k+++  +++l   + r+W+ +++y k+++   l++GWk Fv++n+L e D++vF+ +
  Gorai.009G207400.9 155 FMVVMKPTHVWRRFYMAIPVAWTAKHHLKENT--DIIL-RINKRTWRTRYNYHKNRDCGGLSGGWKCFVNDNNLIEYDVCVFEPS 236
                         778999********************999655..5664.4688*******9977777778**********************954 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.0E-13155248IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-18155237IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.56155253IPR003340B3 DNA binding domain
CDDcd100171.14E-21155251No hitNo description
SuperFamilySSF1019365.89E-18155243IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-13155236IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MFEGQSLCEK GSSYFVRKCV HPESENGYQN KRKIDENPDE IVHKSSQCGL ESSPEKSTNN  60
DIGTAPSRGP INSAPTNKKM RYAGSSTKSI YARHLGGKER CTFPGEVRFE TEFDGAIMDE  120
GDFSPHPTCY NGPLTQFEKA NAIAKAQEAL TRDGFMVVMK PTHVWRRFYM AIPVAWTAKH  180
HLKENTDIIL RINKRTWRTR YNYHKNRDCG GLSGGWKCFV NDNNLIEYDV CVFEPSNIGG  240
KPIILDVIII RVLDSAVQAP VPLTITHPAS C*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.22411e-179flower|seedling| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487409361e-179
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445060.10.0PREDICTED: B3 domain-containing protein REM16-like isoform X1
TrEMBLA0A0D2S5660.0A0A0D2S566_GOSRA; Uncharacterized protein
STRINGGorai.009G207400.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-33B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]