PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G207400.9 | ||||||||
Common Name | B456_009G207400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 272aa MW: 30459.5 Da PI: 8.32 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.9 | 5.7e-16 | 155 | 236 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f v++p +v ++ + +p +++h +k+++ +++l + r+W+ +++y k+++ l++GWk Fv++n+L e D++vF+ + Gorai.009G207400.9 155 FMVVMKPTHVWRRFYMAIPVAWTAKHHLKENT--DIIL-RINKRTWRTRYNYHKNRDCGGLSGGWKCFVNDNNLIEYDVCVFEPS 236 778999********************999655..5664.4688*******9977777778**********************954 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 2.0E-13 | 155 | 248 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-18 | 155 | 237 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.56 | 155 | 253 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.14E-21 | 155 | 251 | No hit | No description |
SuperFamily | SSF101936 | 5.89E-18 | 155 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.5E-13 | 155 | 236 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MFEGQSLCEK GSSYFVRKCV HPESENGYQN KRKIDENPDE IVHKSSQCGL ESSPEKSTNN 60 DIGTAPSRGP INSAPTNKKM RYAGSSTKSI YARHLGGKER CTFPGEVRFE TEFDGAIMDE 120 GDFSPHPTCY NGPLTQFEKA NAIAKAQEAL TRDGFMVVMK PTHVWRRFYM AIPVAWTAKH 180 HLKENTDIIL RINKRTWRTR YNYHKNRDCG GLSGGWKCFV NDNNLIEYDV CVFEPSNIGG 240 KPIILDVIII RVLDSAVQAP VPLTITHPAS C* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.2241 | 1e-179 | flower|seedling| flowering |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 48740936 | 1e-179 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012445060.1 | 0.0 | PREDICTED: B3 domain-containing protein REM16-like isoform X1 | ||||
TrEMBL | A0A0D2S566 | 0.0 | A0A0D2S566_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G207400.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 8e-33 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G207400.9 |
Publications ? help Back to Top | |||
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