PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G207400.4 | ||||||||
Common Name | B456_009G207400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 314aa MW: 35803.4 Da PI: 6.9454 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.8 | 7.5e-17 | 34 | 109 | 13 | 94 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +++l +p kfa+++ +k + t+t++ +sg W++ l + +++ ++ +GW++Fv ++ L+e+D ++Fk++g s f v Gorai.009G207400.4 34 LHQLEIPEKFAKNIRKK--LPETVTVKGPSGIIWDLGL--TADGDTLFFNDGWRNFVLDHSLEENDLLIFKYNGLSHF--DV 109 5789*******888755..8889***************..99999**************************9886776..44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.46E-21 | 21 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.789 | 22 | 115 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.49E-18 | 24 | 112 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-19 | 24 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.9E-14 | 25 | 115 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-13 | 35 | 107 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.7E-4 | 265 | 311 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MGDSSEDCRS REEEIFWTHF QCIHFSQFLR GDFLHQLEIP EKFAKNIRKK LPETVTVKGP 60 SGIIWDLGLT ADGDTLFFND GWRNFVLDHS LEENDLLIFK YNGLSHFDVL MFEGQSLCEK 120 GSSYFVRKCV HPESENGYQN KRKIDENPDE IVHKSSQCGL ESSPEKSTNN DIGTAPSRGP 180 INSAPTNKKM RYAGSSTKSI YARHLGGKER CTFPGEVRFE TEFDGAIMDE GDFSPHPTCY 240 NGPLTQFEKA NAIAKAQEAL TRDGFMVVMK PTHVWRRFYM AIPVAWTAKH HLKENTDIIL 300 RINKRTWRTS LPI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.2241 | 1e-179 | flower|seedling| flowering |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 48740936 | 1e-179 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012445062.1 | 0.0 | PREDICTED: B3 domain-containing protein REM16-like isoform X3 | ||||
TrEMBL | A0A0D2TND1 | 0.0 | A0A0D2TND1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G207400.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-54 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G207400.4 |
Publications ? help Back to Top | |||
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