PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G207400.3
Common NameB456_009G207400, LOC105769153
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 373aa    MW: 42297.9 Da    PI: 7.5351
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G207400.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.31e-16341091394
                         TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                  B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                         +++l +p kfa+++ +k   + t+t++ +sg  W++ l  +  +++ ++ +GW++Fv ++ L+e+D ++Fk++g s f   v
  Gorai.009G207400.3  34 LHQLEIPEKFAKNIRKK--LPETVTVKGPSGIIWDLGL--TADGDTLFFNDGWRNFVLDHSLEENDLLIFKYNGLSHF--DV 109
                         57899******888755..8889***************..99999**************************9886776..44 PP
2B349.11e-15256337185
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f  v++p +v ++  + +p   +++h +k+++  +++l   + r+W+ +++y k+++   l++GWk Fv++n+L e D++vF+ +
  Gorai.009G207400.3 256 FMVVMKPTHVWRRFYMAIPVAWTAKHHLKENT--DIIL-RINKRTWRTRYNYHKNRDCGGLSGGWKCFVNDNNLIEYDVCVFEPS 337
                         778999********************999655..5664.4688*******9977777778**********************954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.04E-2021113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.78922115IPR003340B3 DNA binding domain
CDDcd100172.14E-1824112No hitNo description
Gene3DG3DSA:2.40.330.103.8E-1924113IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.9E-1425115IPR003340B3 DNA binding domain
PfamPF023621.4E-1335107IPR003340B3 DNA binding domain
SMARTSM010192.0E-13256349IPR003340B3 DNA binding domain
PROSITE profilePS5086310.56256354IPR003340B3 DNA binding domain
SuperFamilySSF1019361.08E-17256344IPR015300DNA-binding pseudobarrel domain
CDDcd100175.14E-20256352No hitNo description
PfamPF023622.8E-13256337IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-18256338IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MGDSSEDCRS REEEIFWTHF QCIHFSQFLR GDFLHQLEIP EKFAKNIRKK LPETVTVKGP  60
SGIIWDLGLT ADGDTLFFND GWRNFVLDHS LEENDLLIFK YNGLSHFDVL MFEGQSLCEK  120
GSSYFVRKCV HPESENGYQN KRKIDENPDE IVHKSSQCGL ESSPEKSTNN DIGTAPSRGP  180
INSAPTNKKM RYAGSSTKSI YARHLGGKER CTFPGEVRFE TGDFSPHPTC YNGPLTQFEK  240
ANAIAKAQEA LTRDGFMVVM KPTHVWRRFY MAIPVAWTAK HHLKENTDII LRINKRTWRT  300
RYNYHKNRDC GGLSGGWKCF VNDNNLIEYD VCVFEPSNIG GKPIILDVII IRVLDSAVQA  360
PVPLTITHPA SC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.22411e-180flower|seedling| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487409361e-180
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445061.10.0PREDICTED: B3 domain-containing protein REM16-like isoform X2
TrEMBLA0A0D2TND70.0A0A0D2TND7_GOSRA; Uncharacterized protein
STRINGGorai.009G207400.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-73B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]