PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G207400.1 | ||||||||
Common Name | B456_009G207400, LOC105769153 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 382aa MW: 43306 Da PI: 6.867 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.3 | 1.1e-16 | 34 | 109 | 13 | 94 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +++l +p kfa+++ +k + t+t++ +sg W++ l + +++ ++ +GW++Fv ++ L+e+D ++Fk++g s f v Gorai.009G207400.1 34 LHQLEIPEKFAKNIRKK--LPETVTVKGPSGIIWDLGL--TADGDTLFFNDGWRNFVLDHSLEENDLLIFKYNGLSHF--DV 109 57899******888755..8889***************..99999**************************9886776..44 PP | |||||||
2 | B3 | 49 | 1.1e-15 | 265 | 346 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f v++p +v ++ + +p +++h +k+++ +++l + r+W+ +++y k+++ l++GWk Fv++n+L e D++vF+ + Gorai.009G207400.1 265 FMVVMKPTHVWRRFYMAIPVAWTAKHHLKENT--DIIL-RINKRTWRTRYNYHKNRDCGGLSGGWKCFVNDNNLIEYDVCVFEPS 346 778999********************999655..5664.4688*******9977777778**********************954 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.08E-20 | 21 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.789 | 22 | 115 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.24E-18 | 24 | 112 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 4.0E-19 | 24 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.9E-14 | 25 | 115 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-13 | 35 | 107 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-13 | 265 | 346 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.56 | 265 | 363 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-13 | 265 | 358 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.50E-20 | 265 | 361 | No hit | No description |
SuperFamily | SSF101936 | 1.12E-17 | 265 | 353 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-18 | 265 | 347 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MGDSSEDCRS REEEIFWTHF QCIHFSQFLR GDFLHQLEIP EKFAKNIRKK LPETVTVKGP 60 SGIIWDLGLT ADGDTLFFND GWRNFVLDHS LEENDLLIFK YNGLSHFDVL MFEGQSLCEK 120 GSSYFVRKCV HPESENGYQN KRKIDENPDE IVHKSSQCGL ESSPEKSTNN DIGTAPSRGP 180 INSAPTNKKM RYAGSSTKSI YARHLGGKER CTFPGEVRFE TEFDGAIMDE GDFSPHPTCY 240 NGPLTQFEKA NAIAKAQEAL TRDGFMVVMK PTHVWRRFYM AIPVAWTAKH HLKENTDIIL 300 RINKRTWRTR YNYHKNRDCG GLSGGWKCFV NDNNLIEYDV CVFEPSNIGG KPIILDVIII 360 RVLDSAVQAP VPLTITHPAS C* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.2241 | 1e-179 | flower|seedling| flowering |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 48740936 | 1e-179 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012445060.1 | 0.0 | PREDICTED: B3 domain-containing protein REM16-like isoform X1 | ||||
TrEMBL | A0A0D2UR56 | 0.0 | A0A0D2UR56_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A2P5Q955 | 0.0 | A0A2P5Q955_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G207400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10428 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-72 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G207400.1 |
Entrez Gene | 105769153 |
Publications ? help Back to Top | |||
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