PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G201300.1

Common Name

B456_009G201300, LOC105769601

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ZF-HD

Protein Properties

Length: 300aa MW: 32706.8 Da PI: 8.4969

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G201300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	104.6	6.1e-33	92	147	4	60
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 vrY+eClkNhAas+Gg+++DGCgEfmps geegt +alkCaAC+CHRnFHR+ev+ e Gorai.009G201300.1 92 VRYRECLKNHAASIGGNVYDGCGEFMPS-GEEGTLEALKCAACDCHRNFHRKEVDGE 147 89***********************9.999*******************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	7.0E-25	84	145	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.3E-30	92	144	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.0E-31	93	144	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.909	94	143	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.52E-16	225	292	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-29	234	294	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	5.2E-27	235	292	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MEVRGQEHDI KTPGSSAFGL HSPGVERRKD GNHNGTAVLT CTQTLDHVHH LQRQQSLGQG 60 RSPHPDRVAA ATGAAAVAPI SVGSNAKPSN FVRYRECLKN HAASIGGNVY DGCGEFMPSG 120 EEGTLEALKC AACDCHRNFH RKEVDGETQF GANPSRTLML NPLQLPPPLP SPTMLHPHHK 180 YSIHTSPSSA IVASMNNMAF GSGGGGGNES SSEDLNVFQS NADGVPPPPP YVLSKKRFRT 240 KFTQEQKDKM LELAEKVGWR INKQDEEEVQ KFCAEYGVKR QVFKVWMHNN KNVKKPPPE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-23	234	292	16	74	ZF-HD homeobox family protein
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.2731	0.0	flower\|seedling\| flowering

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269\|PubMed:16428600, ECO:0000269\|PubMed:21059647, ECO:0000269\|PubMed:21779177}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269\|PubMed:21779177}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012445796.1	0.0	PREDICTED: zinc-finger homeodomain protein 5
Refseq	XP_012445797.1	0.0	PREDICTED: zinc-finger homeodomain protein 5
Swissprot	Q9FRL5	7e-68	ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBL	A0A0D2TSU8	0.0	A0A0D2TSU8_GOSRA; Uncharacterized protein
STRING	Gorai.009G201300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7279	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18350.1	1e-54	homeobox protein 24

Link Out ? help Back to Top
Phytozome	Gorai.009G201300.1
Entrez Gene	105769601

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]