PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G198500.1
Common NameB456_009G198500, LOC105770745
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 460aa    MW: 51664.1 Da    PI: 6.4007
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G198500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.5e-093814181954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +e+  LA+++gLt++q+++WF N R +
  Gorai.009G198500.1 381 FEHflHPYPTDSEKLMLASQTGLTKNQISNWFINARVR 418
                         664459******************************88 PP
2BELL99.91.9e-32244313372
                BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         +el+++ akL+ lleeV+ r+++y++q++ v+ssFe  aglg+ak+Yt+lAl+a+SrhF +L+dai+++i
  Gorai.009G198500.1 244 NELRIRLAKLIGLLEEVELRFEKYYQQMEEVVSSFESLAGLGAAKSYTALALQAMSRHFGNLRDAIISHI 313
                         6899***************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.9E-28177311IPR006563POX domain
PfamPF075261.4E-32183309IPR006563POX domain
PROSITE profilePS5007112.017359422IPR001356Homeobox domain
SMARTSM003891.1E-9362426IPR001356Homeobox domain
CDDcd000863.36E-11362423No hitNo description
Gene3DG3DSA:1.10.10.602.6E-27367428IPR009057Homeodomain-like
SuperFamilySSF466891.84E-17367429IPR009057Homeodomain-like
PfamPF059209.8E-18379418IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MVSRDSPPNP TSSMLHHFIV SDPINSRNQF GGQPFDAYGS TLRGNHNTFP QSLGLLPTIH  60
SLGERMSRSM DLLPSPIVTD ESDISQTRHL MDLLGAANET NHQTQRLSLS LGSHMLDPSL  120
NSGITSPSYL LSRAEDREAC NPGVGNLRDD YNFTVNTFAS PSTSLHRSLL TTYGAAESFA  180
TAIVNSRYLK PTESLLHELV NIGGKNVDEN FFGKLYLGDR GGNARLSSEL KAEFCSNEML  240
LPENELRIRL AKLIGLLEEV ELRFEKYYQQ MEEVVSSFES LAGLGAAKSY TALALQAMSR  300
HFGNLRDAII SHINVIRRKF SHDLPRINRG LSQLSLFDRD SRQNRQSLQQ QLGMIPRQRQ  360
AWRPIRGLPE TSVAILRTWL FEHFLHPYPT DSEKLMLASQ TGLTKNQISN WFINARVRLW  420
KPMIEEMYKE EFEDSPQDSD PSFASSSMGR EGITDQAED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A6e-16368426563Homeobox protein Meis2
3k2a_B6e-16368426563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447529.10.0PREDICTED: BEL1-like homeodomain protein 11
RefseqXP_012447530.10.0PREDICTED: BEL1-like homeodomain protein 11
RefseqXP_012447531.10.0PREDICTED: BEL1-like homeodomain protein 11
SwissprotQ1PFD13e-98BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A0D2TSQ30.0A0A0D2TSQ3_GOSRA; Uncharacterized protein
STRINGGorai.009G198500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97362734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.13e-97BEL1-like homeodomain 11
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]